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		<title>3-D printing: Wave of the future</title>
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		<pubDate>Fri, 14 Jun 2013 04:22:26 +0000</pubDate>
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		<category><![CDATA[Alejandro Roldan]]></category>
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		<description><![CDATA[Layer by layer, 3-D printers fuse tiny particles of plastic or metal, building complex parts from computer instructions -- forget hold the prototype or template! How good are these parts? What are they used for? Are 3-D printers the wave of the manufacturing future? <a href="http://whyfiles.org/2013/3-d-printing-wave-of-the-future/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3>Saved by the printer!</h3>
<p>If you&#8217;ve been wondering about 3-D printing, it&#8217;s probably for the same reason we are. On May 17, we learned that surgeons had placed a life-saving support &#8212; built on a 3-D printer &#8212; into the airway of Kaiba Gionfriddo.</p>
<div id="attachment_30301" class="wp-caption alignright" style="width: 260px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/heart.jpg" rel="lightbox[30272]"><img class="size-thumbnail wp-image-30301" src="http://whyfiles.org/wp-content/uploads/2013/06/heart-250x188.jpg" alt="Man holds model in front of computer screen, showing resemblance between model and MRI image." width="250" height="188" /></a><p class="wp-caption-text">Alejandro Roldan of the University of Wisconsin-Madison holds a printed, 3-D model of a heart against its computer design, which was based on a patient’s MRI scan. The system, still under development, could be used to guide surgery to repair defective organs. Using the realistic, printed model, the surgeon can perform “virtual surgery” to test the effect of heart-remodeling surgery on blood flow and pumping efficiency — without touching the patient.<br />Credit: The Why Files</p></div>
<p>Kaiba was an emergency case: Every day, his breathing stopped when his airway collapsed. The support was patterned on CT images of his airway, and printed in biodegradable plastic.</p>
<p>That welcome news came just three days after Forbes reported <a href="http://www.forbes.com/sites/andygreenberg/2013/05/14/diy-firearms-makers-already-replicating-and-remixing-the-3-D-printed-gun-photos/">widespread interest</a> in a handgun printed with similar technology.</p>
<p>A 3-D printer builds up objects layer by layer, using various methods to deposit and harden the &#8220;ink&#8221; where it is needed. Many materials, including plastic, metal, ceramic and even human cells, can now be printed, based on instructions from computer-assisted design (CAD) programs.</p>
<p>“Quite a few doctors said he had a good chance of not leaving the hospital alive,” says April Gionfriddo, about her son, Kaiba, who is now 20 months old. “We were desperate.”</p>
<p>With emergency clearance from the Food and Drug Administration, Glenn Green and Scott Hollister of the University of Michigan printed a tracheal splint, using a polymer that they expect to be absorbed by the body in three years.</p>
<p>
On February 9, 2012, the splint was sewn around Kaiba’s airway to expand it and serve as a skeleton for proper growth. “It was amazing. As soon as the splint was put in, the lungs started going up and down for the first time and we knew he was going to be okay,” says Green.</p>
<h3>How much hype? How much reality?</h3>
<p>You&#8217;ve heard the 3-D hype: Factories are becoming obsolete. When you need a part, you&#8217;ll feed a downloaded file into your personal printer, and press &#8220;print.&#8221;</p>
<p>Today, many of those objects turn out to be trinkets, baubles, chess pieces or covers for slab-phones.</p>
<a href="http://whyfiles.org/2013/3-d-printing-wave-of-the-future/#gallery-30272-1-slideshow">Click to view slideshow.</a>
<p>The situation reminds us of the giga-hype over nanotechnology about 25 years ago, when invisible, nanometer-sized robots would supposedly emulate proteins or enzymes and usher in the era of self-assembly.</p>
<p>The over-sell is not that bad, &#8220;but there&#8217;s still an incredible amount of hype&#8221; in 3-D printing, says Tim Osswald, a professor of mechanical engineering at University of Wisconsin-Madison. In fact, he says, some are touting &#8212; as a legitimate business venture &#8212; the idea of printing whole motorcycles. &#8220;No, we can&#8217;t do that,&#8221; he says.</p>
<p>&#8220;We can&#8217;t 3-D print clothing, though people say they will,&#8221; says Osswald, who researches the raw material &#8212; the &#8220;ink&#8221; &#8212; for 3-D printing. &#8220;Why should we? We can sew clothing much easier, and besides we don’t have a powder tiny enough to make a fabric.&#8221;</p>
<p>And still, as the printed airway and the handgun demonstrate, the 3-D printing wave is getting legs. What can &#8212; and can&#8217;t &#8212; these gadgets do? How do they work?</p>
<h3>Promise and hype of 3-D printing</h3>
<p>Some of the features of 3-D printing lend themselves to designing, prototyping, visualizing and experimenting. Others can make parts that cannot be made any other way.</p>
<p>3-D printing can:</p>
<ul>
<li>&#8220;Print&#8221; plastic, metal, even living cells. (After printing, ceramic and glass must undergo high-temperature firing).</li>
<li>Eliminate the need for a mold, which is a major expense for metal, plastic, ceramic and glass parts.</li>
<li>Create parts &#8212; even entire assemblies &#8212; that could never previously be made.</li>
</ul>
<p>Building up the shape one layer at a time allows one part to be formed inside another. &#8220;It opens the ability to engineer in a different way,&#8221; says David Sheffler, in mechanical and aerospace engineering at the University of Virginia.</p>
<p>We wondered why we&#8217;re hearing so much about 3-D printing right now when a variant called stereolithography has been around for almost three decades. &#8220;It was used in the back rooms of design firms, and it always used to frustrate me,&#8221; says Hod Lipson of Cornell University. &#8220;I&#8217;d talk on the street about this incredible technology that could make anything you want, but nobody knew about it.&#8221;</p>
<div id="attachment_30315" class="wp-caption aligncenter" style="width: 510px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/selective-laser-sintering.jpg" rel="lightbox[30272]"><img class="size-medium wp-image-30315" src="http://whyfiles.org/wp-content/uploads/2013/06/selective-laser-sintering-500x246.jpg" alt="Diagram shows how selective laser sintering works: laser beam selectively fuses power layer by layer and unsintered particles are removed later." width="500" height="246" /></a><p class="wp-caption-text">A layer of powder on the work surface is selectively heated with a laser. The process called sintering solidifies the powder into the part; the unsintered powder can later be removed. Laser sintering allows low-volume production of complex parts in metal and plastic. Programming the laser light determines what becomes part, and what gets blown away to form voids.<br />Modified from <a href="http://en.wikipedia.org/wiki/File:Selective_laser_melting_system_schematic.jpg" rel="nobox" rel="lightbox[30272]">Materialgeeza</a></p></div>
<h3>Printing medical miracles</h3>
<p>The life-saving replacement airway in Michigan is &#8220;a perfect example of different ways in which 3-D printing can be used to improve life,&#8221; says Lipson, co-author of a new book on the technology<a class="simple-footnote" title="Fabricated: The promise and peril of a machine that can make (almost) anything, Hod Lipson and Melba Kurman, Wiley, 2013." id="return-note-30272-1" href="#note-30272-1"><sup>1</sup></a>.</p>
<p>The technology is also infiltrating medicine, says Lipson. &#8220;There are hundreds of bone implants, printed in titanium, usually for hip replacements, based on an MRI scan.&#8221;</p>
<p>At Cornell, Lipson says, &#8220;We almost routinely print plastic bone for the veterinary school before a complex procedure, so the surgery is like putting a puzzle together the second time.&#8221;</p>
<p>3-D printing is also used in Invisalign plastic braces, which &#8220;have to be custom-made in a series that will gradually pull your teeth into the right place. Most people don’t know that 50,000 of these are 3-D printed each day. Someone you encountered today is wearing this 3-D printed prosthetic.&#8221;</p>
<h3>3-D printing: the hard cell</h3>
<p>3-D printing is not just for plastics. A &#8220;cell printer&#8221; that works like an ink-jet printer can spray a precise stream of gel containing living cells. Early tests are looking at using cell printing to form a meniscus, a tissue that cushions the knee.</p>
<p>Other simple tissues that may be printed include bone and cartilage, Lipson adds. &#8220;As the technology becomes more complex, the kidney, liver and spinal disks&#8221; are likely to be future targets.</p>
<p>Ideally, some replacement tissues should have the capacity to grow, Lipson says. &#8220;If a plastic heart valve was implanted in a child, it would have to be replaced&#8221; as the child matured. A valve made of the patient&#8217;s own cells might grow with the child, he says. &#8220;That&#8217;s revolutionary!&#8221;</p>
<h3>Testing your mettle</h3>
<p>Although 3-D printing began with plastic, metal can be printed in an inert environment that prevents oxidation. A laser sinters the metal powder after each layer is laid down. &#8220;The properties of the resulting metal are almost identical to bulk metal; it&#8217;s a very viable, engineering-tested way of making metal parts,&#8221; says Lipson.</p>
<p>But there&#8217;s little sense copying conventional metal parts, says Lipson, who points to growing interest in the aerospace industry for parts with new shapes. &#8220;What you made with a forge you can still make, but you can also make hollow or organic shapes, and end up with a shape with the same performance, but half the weight.&#8221;</p>
<p>Under consideration is 3-D printing of jet-engine turbine blades with air channels for better cooling.</p>
<blockquote><video id='1c916afb' class='sublime' width='500' height='375' poster='http://whyfiles.org/wp-content/uploads/2013/06/3D-futbol-poster.png' preload='none' data-uid='1c916afb' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/06/3D-printed-ball.mp4' />
</video>
</blockquote>
<p class="blockquote">A one-piece fútbol made with 3-D printing actually bounces on springy plastic internal struts. &#8220;Now engineering becomes open ended,&#8221; says Tim Osswald. &#8220;To make something like this with traditional molds, you would have to glue it together by hand. These are things that you could not make before. Now you can rethink engineering.&#8221;<br />
<br clear="all" />Ball courtesy Tim Osswald/University of Wisconsin-Madison; video by The Why Files.</p>
<p>Aircraft are produced in small quantities, have very complex parts and can be very expensive. &#8220;That&#8217;s where the technology has the best value,&#8221; says Lipson. &#8220;You are not going to be printing toothbrushes.&#8221;</p>
<p>Mark Ganter, professor of mechanical engineering at the University of Washington, has come up with some interesting new printing materials, including ceramic. He is currently working on glass-ceramic composites, and says, &#8220;We see these being used in everything from armor to building materials. Disposable ceramic armor would be a big deal for a flak jacket; you could custom-tailor the inserts.&#8221;</p>
<p>3-D printing may also be used to print molds for casting metal &#8212; sidestepping the highly skilled job of mold-maker.</p>
<h3>On the other hand…</h3>
<p>After all this enthusiasm, it&#8217;s time for some cautions. For medium- and large-sized production runs of plastic parts, injection-molded plastic is cheap, fast, automated and reliable, even considering the cost of the mold.</p>
<p>Even the staunchest advocates warn that 3-D printing is not suited to every task, and issues concerning raw material, strength and deformation all need to be addressed as the field matures.</p>
<p>One issue is post-printing change of shape, &#8220;You get shrinkage, warpage, issues with dimensional stability,&#8221; says Osswald. &#8220;This has been a problem since plastic has existed. When Alexander Parkes made cellulose in 1856, a few months later, all the parts had warped because the plasticizer had evaporated.&#8221;</p>
<p>Printed plastic can shrink as much as 5 percent, Osswald says.</p>
<p>A second limitation concerns particle size in the &#8220;ink.&#8221; &#8220;We are using 50 to 100 micrometers now,&#8221; Osswald says, which creates the characteristic roughness on printed plastic, &#8220;but are hoping to get much smaller. We can make particles as small as 5 micrometers, but they still need to flow through the machine.&#8221;</p>
<p>Poor flow can leave voids in parts that become prone to cracking. In a tiny structure, Osswald says, pores and valleys become even more problematic. &#8220;You can get a mess, a part that will fall apart.&#8221;</p>
<p>Useful plastics, such as polylactic acid, a biodegradable substance used in medicine, can also be hard to powder, Osswald says. &#8220;You can freeze it and grind it into a very fine powder, but it&#8217;s very jaggedy, and does not flow easily.&#8221;</p>
<div id="attachment_30304" class="wp-caption alignright" style="width: 260px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/pelletizer.jpg" rel="lightbox[30272]"><img class="size-thumbnail wp-image-30304" src="http://whyfiles.org/wp-content/uploads/2013/06/pelletizer-250x188.jpg" alt="Man holds cylindrical machine in his hand. " width="250" height="188" /></a><p class="wp-caption-text">Tim Osswald holds a prototype &#8220;micropelletizer&#8221; that produces tiny pellets of new plastics. &#8220;We have made powders and are trying to scale up, making polymers that can&#8217;t now be made into spheres&#8221; for 3-D printing, he says.<br />Credit: The Why Files</p></div>
<h3>How expensive? How cheap?</h3>
<p>3-D printers have a long way to go before they can compete with injection-molded plastic, one of the cheapest technologies ever invented. But cost is falling, says Sheffler. &#8220;The cost of bigger printers is following Moore&#8217;s law [which predicted a geometric decline in the cost of computer memory] very closely. We bought one for $30,000 two years ago, and now it costs $20,000.&#8221;</p>
<div id="attachment_30308" class="wp-caption alignleft" style="width: 259px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/3d-printer.jpg" rel="lightbox[30272]"><img class="size-medium wp-image-30308" src="http://whyfiles.org/wp-content/uploads/2013/06/3d-printer-249x375.jpg" alt="A orange box contains a white shape with many wires, and belts used to position ink-jet head." width="249" height="375" /></a><p class="wp-caption-text">When it was sold in 2011, the stripped-down MakerBot Cupcake CNC cost $455.<br />Courtesy: <a href="http://www.flickr.com/photos/bre/3458247336/">Bre Pettis</a></p></div>
<p>It&#8217;s the same trend evident in plasma TVs and many other new-fangled technologies, Sheffler adds.</p>
<p>A key advance came in the mid 2000s with the introduction of two open-source 3-D printers, says Lipson. &#8220;We went from a vicious cycle, where it was expensive, and therefore had a narrow market, and was therefore expensive, to an open-source, cheap, hackable system that anybody could use.&#8221;</p>
<p>Lipson, who helped usher &#8220;<a href=" http://www.fabathome.org">Fab@Home</a>&#8221; into being in 2006, says it and another called RepRap, &#8220;seeded the transition, and since then hundreds, then thousands of 3-D printers were made… This has brought the technology to the attention of the masses, and the media.&#8221;</p>
<p>The airplane &#8220;would be incredibly complicated to build by hand, but we designed, engineered, did the analysis in a CAD program, and printed out exactly what we designed,&#8221; Sheffler says. &#8220;No manual labor was involved.&#8221;</p>
<p>And there&#8217;s a significant fringe benefit to 3-D printing, Sheffler says. &#8220;Students love it, and it&#8217;s not just students, it&#8217;s me. The students are out there doing real research, applications; we are learning as we go. It&#8217;s great stuff, we&#8217;re having a ball!&#8221;</p>
<div id="attachment_30310" class="wp-caption aligncenter" style="width: 510px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/3d-printed-airplane.jpg" rel="lightbox[30272]"><img class="size-medium wp-image-30310" src="http://whyfiles.org/wp-content/uploads/2013/06/3d-printed-airplane-500x253.jpg" alt="3D printed airplane" width="500" height="253" /></a><p class="wp-caption-text">This printed plane actually flies! A summer project for two students, the printed plane has a skin that takes the load. &#8220;There are no spars inside, it was fully printed,&#8221; says Sheffler. A standard battery-powered electric motor supplies the power. &#8220;This is a snap-together plastic airplane that&#8217;s very stable. We pulled off something amazing.&#8221;<br />Courtesy David Sheffler, University of Virginia</p></div>
<p>Osswald agrees. &#8220;Students are now thinking, &#8216;I can make this!&#8217; They get weird ideas, ideas that we [older people] would not get because our brains are hard-wired. Young people can think outside the box, they don’t have the same restrictions that we have grown accustomed to.&#8221;</p>
<p>With 3-D printing, &#8220;There are a lot less restrictions on what you design.&#8221;</p>
<h3>Summing up</h3>
<p>So will a 3-D printer be fraternizing with your ink-jet printer in five years? Possibly… Prices are dropping, and capabilities are rising. But to really get the best from the printer, you my need some rare expertise, says Ganter. &#8220;The reality is that every one can own these things, but the difference is, to make an object on a 3-D printer, you need some kind of CAD background, you need skills that ordinary people don’t seem to possess.&#8221;</p>
<div id="attachment_30306" class="wp-caption aligncenter" style="width: 481px"><a href="http://whyfiles.org/wp-content/uploads/2013/06/3D-usage-chart.jpg" rel="lightbox[30272]"><img class="size-medium wp-image-30306" src="http://whyfiles.org/wp-content/uploads/2013/06/3D-usage-chart-471x375.jpg" alt="Pie chart shows 5 biggest uses: functional models, artistic items, spare parts, research/education, and direct part production." width="471" height="375" /></a><p class="wp-caption-text">Researchers from Finland surveyed people around the globe who are involved in 3-D printing; 350 people responded.<br />Credit: The Why Files. Data from <a href="”http://surveys.peerproduction.net/2012/05/manufacturing-in-motion/”">Statistical Studies of Peer Production</a>.</p></div>
<p>And even though an increasing range of printer instructions is available for download, who knows if you will find data on the broken widget on your essential gadget? If not, as Ganter stresses, you may not have the computer-assisted design necessary to control the printer. &#8220;I tell my engineering students, you possess skills that the average person may not possess. It&#8217;s not that it&#8217;s impossible, but not everybody is an engineer, not everybody is a designer, not everybody is an artisan.&#8221;</p>
<div id="writer">&#8211; David J. Tenenbaum</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="The world&#8217;s first 3D printed gun, house, bikini, aircraft and jaw transplant." id="return-note-30272-2" href="#note-30272-2"><sup>2</sup></a>
<a class="simple-footnote" title="3D printing gives baby a breath of life." id="return-note-30272-3" href="#note-30272-3"><sup>3</sup></a>
<a class="simple-footnote" title="[VIDEO] A grain-sized race car printed in 4 minutes." id="return-note-30272-4" href="#note-30272-4"><sup>4</sup></a>
<a class="simple-footnote" title="Restoring Beauty: A bald eagle gets a new 3D printed beak." id="return-note-30272-5" href="#note-30272-5"><sup>5</sup></a>
<a class="simple-footnote" title="Dining in space: How about a 3D printed pizza?" id="return-note-30272-6" href="#note-30272-6"><sup>6</sup></a>
<a class="simple-footnote" title="3D-printed &#8216;bionic&#8217; ear beats human ear." id="return-note-30272-7" href="#note-30272-7"><sup>7</sup></a>
<a class="simple-footnote" title="Create human organs with 3D printer and “bio-Ink.”" id="return-note-30272-8" href="#note-30272-8"><sup>8</sup></a>
<a class="simple-footnote" title="Why 3-D printing matters for &#8220;made in U.S.A.&#8221;" id="return-note-30272-9" href="#note-30272-9"><sup>9</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-30272-1">Fabricated: The promise and peril of a machine that can make (almost) anything, Hod Lipson and Melba Kurman, Wiley, 2013. <a href="#return-note-30272-1">&#8617;</a></li><li id="note-30272-2"><a href="http://www.huffingtonpost.com/2013/05/06/3d-printed-gun-fired_n_3222669.html">The world&#8217;s first 3D printed gun</a>, <a href="http://www.telegraph.co.uk/travel/ultratravel/the-next-big-thing/10110195/The-worlds-first-3D-printed-house.html">house</a>, <a href="”http://www.youtube.com/watch?v=d2iT8S0m3m4”">bikini</a>, <a href="”http://www.newscientist.com/article/dn20737-3d-printing-the-worlds-first-printed-plane.html#.UbncFvn70ZA”">aircraft</a> and <a href="”http://www.bbc.co.uk/news/technology-16907104”">jaw transplant</a>. <a href="#return-note-30272-2">&#8617;</a></li><li id="note-30272-3"><a href="http://uofmhealthblogs.org/5563/saving-a-babys-life-with-a-3d-laser-printer/">3D printing gives baby a breath of life.</a> <a href="#return-note-30272-3">&#8617;</a></li><li id="note-30272-4"><a href="http://www.youtube.com/watch?feature=player_embedded&amp;v=5y0j191H0kY">[VIDEO] A grain-sized race car printed in 4 minutes.</a> <a href="#return-note-30272-4">&#8617;</a></li><li id="note-30272-5"><a href="http://www.guardian.co.uk/science/grrlscientist/2012/sep/08/1">Restoring Beauty: A bald eagle gets a new 3D printed beak.</a> <a href="#return-note-30272-5">&#8617;</a></li><li id="note-30272-6"><a href="http://www.huffingtonpost.com/2013/05/21/3d-printed-food-nasa_n_3313363.html">Dining in space: How about a 3D printed pizza?</a> <a href="#return-note-30272-6">&#8617;</a></li><li id="note-30272-7"><a href="http://mashable.com/2013/05/24/3d-printed-ear-princeton/">3D-printed &#8216;bionic&#8217; ear beats human ear.</a> <a href="#return-note-30272-7">&#8617;</a></li><li id="note-30272-8"><a href="http://www.sciencedaily.com/releases/2013/03/130308183708.htm">Create human organs with 3D printer and “bio-Ink.”</a> <a href="#return-note-30272-8">&#8617;</a></li><li id="note-30272-9"><a href="http://www.scientificamerican.com/article.cfm?id=why-3d-printing-matters">Why 3-D printing matters for &#8220;made in U.S.A.&#8221;</a> <a href="#return-note-30272-9">&#8617;</a></li></ol></div>]]></content:encoded>
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		<description><![CDATA[A suicidal comet brushes past the sun -- and gives detailed evidence for the sun's swirling magnetic fields, source of the solar wind. As scientists strive to understand that wind and the "space weather" it creates, we pause to celebrate the noble comet Lovejoy. <a href="http://whyfiles.org/2013/comet-explores-sun/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h5>Lovejoy no killjoy: Comet cracks corona question!</h5>
<div class="box400"><a href="http://whyfiles.org/wp-content/uploads/2013/06/downs_hr.jpg" rel="lightbox[30188]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/06/downs_hr.jpg" alt="Comet passed by the Sun, crossing open and closed magnetic field lines." title="Comet passed by the Sun, crossing open and closed magnetic field lines." width="100%" height="auto" class="alignnone size-full wp-image-30205" /></a></p>
<div class="attrib">Modified from original graphic by Cooper Downs</div>
<div class="caption">When Comet Lovejoy streaked past the sun, its tail formed a series of rapid squiggles as it was driven by the sun&#8217;s complex magnetic fields.  Satellite images converted a chunk of ancient ice into a natural scientific instrument that reached where no artificial instrument will ever go. Those open magnetic fields drive the solar wind throughout the solar system.</div>
</div>
<p>To explore the swirling magnetic fields surrounding our neighborhood star, scientists have press-ganged a &#8220;dirty snowball&#8221; into an instrument of science.</p>
<p>As comet Lovejoy brushed perilously close to the sun, it was observed by instruments sensitive to extreme ultraviolet light. &#8220;EUV&#8221; is a short-wavelength, high-energy electromagnetic radiation that acts as the language of the corona, the turbulent, million-degree region surrounding our sun.</p>
<p>Lovejoy&#8217;s suicidal sojourn to within 140,00 kilometers of the sun occurred in December, 2011. As it passed through a fiery-hot region where artificial satellites may never visit, the comet was under the watchful eye of instruments on three satellites.</p>
<p>Although this was only the second comet ever observed in such high-energy ultraviolet light, &#8220;Sun grazing comets have been around for a long time,&#8221; says Cooper Downs, a solar physicist at Predictive Sciences in San Diego who was first author of the paper in this week&#8217;s Science. &#8220;This family of comets is thought to have come from something that broke apart about fifteen hundred years ago.&#8221;</p>
<p>Before its solar roasting, Lovejoy was probably a few hundred meters across, composed mainly of ice.</p>
<div class="box400left">
<video id='995d3337' class='sublime' width='400' height='400' poster='http://whyfiles.org/wp-content/uploads/2013/06/downs_video1.jpg' preload='none' data-uid='995d3337' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/06/downs_video1-Wi-Fi.m4v' />
	<source src='http://whyfiles.org/wp-content/uploads/2013/06/downs_video1-Cellular.m4v' />
</video>
</p>
<div class="attrib">Video courtesy Cooper Downs</div>
<div class="caption">Author Cooper Downs discusses how comet Lovejoy may offer new clues to the sun’s outer layer, called the corona.</div>
</div>
<p>As you can see from the video, the comet&#8217;s tail seems to be buffeted by an invisible wind. In reality, that wind is the sun&#8217;s intricate magnetic field.</p>
<h3>Solar magnetism</h3>
<p>As the icy comet cruised through the super-hot corona, it sublimated into gaseous water, which three seconds later separated into oxygen and hydrogen under intense radiation. The oxygen atoms immediately lost electrons and became ions, forming the state of matter called plasma.</p>
<p>Because plasma is electrically charged, it responds to magnetic fields.</p>
<p>The hot plasma also creates the EUV radiation that was &#8220;seen&#8221; by the satellite instruments dedicated to observing the sun. These detectors are tuned to EUV because the star&#8217;s intense magnetism and radiation elevate conditions to 1 million degrees C, creating a bountiful source of this high-energy radiation.</p>
<p>EUV, says Downs, &#8220;is the natural ballpark for observing the corona, plasma, and the arching magnetic structures&#8221; near the sun. &#8220;The Solar Dynamic Observatory sits and stares, making a continuous image, at these wavelengths.&#8221;</p>
<p>When a July, 2011 comet cruised by the sun, it was &#8220;a happenstance that it showed up in EUV,&#8221; says Downs. &#8220;This led the operators of SDO to off-point the satellite to catch Lovejoy’s ingress in December 2011, which was a big deal because it was an interruption of the standard SDO observing program.&#8221;</p>
<p>The pay dirt in the Science study, the fact that the tail would respond to the magnetic field, &#8220;was unexpected,&#8221; Downs says. But by responding to the magnetic field and sending out ultraviolet messages, plasma in the comet&#8217;s tail became a magnetic-field detector.</p>
<div class="imgBigBlack">
<a href="http://whyfiles.org/wp-content/uploads/2013/06/sun_diagram.jpg" rel="lightbox[30188]"><img src="http://whyfiles.org/wp-content/uploads/2013/06/sun_diagram.jpg" alt="Diagram shows solar prominence: A filament of gas shaped by magnetic fields; solar flare: Sudden release of mass of ions and atoms; photosphere: visible surface of sun; Core: generates energy by fusion; Radiation zone: energy leaves by radiative diffusion; Convection zone: energy leaves by convection" title="Diagram shows solar prominence: A filament of gas shaped by magnetic fields; solar flare: Sudden release of mass of ions and atoms; photosphere: visible surface of sun; Core: generates energy by fusion; Radiation zone: energy leaves by radiative diffusion; Convection zone: energy leaves by convection" width="100%" height="auto" class="alignnone size-full wp-image-30224" /></a></p>
<div class="attrib">Modified from original graphic by <a href=”http://en.wikipedia.org/wiki/File:Sun_poster.svg”>Kelvinsong</a></div>
<div class="caption">The sun isn&#8217;t just a ball of hydrogen and helium.<br />
<strong>Solar prominence</strong>: A filament of dense, relatively cool gas shaped by closed magnetic fields.<br />
<strong>Solar flare</strong>: Sudden release of energetic mass of ions and atoms, often leading to a coronal mass ejection that can spit this material past Earth’s orbit.<br />
<strong>Photosphere</strong>: Visible surface of sun, source of most of the visible light.<br />
<strong>Corona</strong>: Super-hot gas and plasma surrounding the star.<br />
<strong>Core</strong>: generates almost all of Sun’s energy by fusion<br />
<strong>Radiation zone</strong>: energy is transferred out mainly by radiative diffusion<br />
<strong>Convection zone</strong>: energy is transferred out mainly by convection</div>
</div>
<h3>Sun: Hottest act in town!</h3>
<div class="box250">
<a href="http://whyfiles.org/wp-content/uploads/2013/06/lovejoy.jpg" rel="lightbox[30188]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/06/lovejoy.jpg" alt="Comet points down toward Earth's horizon with its two tails behind." title="Comet points down toward Earth's horizon with its two tails behind." width="100%" height="auto" class="alignnone size-full wp-image-30226" /></a></p>
<div class="attrib">Photo: <a href="http://spaceflight.nasa.gov/gallery/images/station/crew-30/html/iss030e015472.html">Dan Burbank, NASA</a></div>
<div class="caption">Comet Lovejoy above Earth’s horizon on Dec. 22, 2011. Why the twin tails? The curved tail is made of dust and usually follows the comet’s orbit. The gas tail is strongly influenced by the solar wind and thus points away from the Sun. Both tails are made largely of water molecules.</div>
</div>
<p>Earth has its strong points, but it&#8217;s the sun that dominates our tiny corner of the universe. Beyond the torrent of visible and invisible radiation, the sun also emits a solar wind of charged particles, spits out the occasional mass of hot atoms, and is surrounded by a phenomenal, changing magnetic field.</p>
<p>The magnetic field originates in a dynamo &#8212; rotation of magnetic materials &#8212; inside the sun.</p>
<p>The comet&#8217;s tail responds to both open and closed magnetic fields, Downs says. The complex, closed fields loop back to the sun, while the open fields are the energy driving the solar wind. &#8220;As the plasma streams out, the field is carried out with it, and the wind buffets Earth.&#8221;</p>
<p>The wind can interfere with electric lines, radio transmissions and satellites.</p>
<p>The outer extent of the solar wind, far beyond Pluto, defines the boundary between the heliosphere, dominated by the sun, and galactic space, says Downs.</p>
<h3>So what?</h3>
<p>The study was the first observation of the wiggle in a comet&#8217;s tail this far down in the solar atmosphere, says Downs. &#8220;It tells us about what happens to the comet as it begins to feel the magnetic field, becomes part of the magnetic field.&#8221;</p>
<p>And so Lovejoy was converted into a disposable scientific instrument, yielding data from a zone that spacecraft almost certainly will never enter.</p>
<p>None of this will help poor old Lovejoy. The little comet nearly survived its attempted suicide, but instead gave its all in the name of science. &#8220;Everyone expected it to disappear, because it came so close.&#8221; The comet was seen leaving the sun, says Downs, &#8220;which was surprising, although it soon fragmented as the thermal stress worked its way into the core.&#8221;</p>
<p>By Dec. 19, Lovejoy&#8217;s corpse had disappeared, Downs adds. Mission accomplished!</p>
<div id="writer">
&#8211; David J. Tenenbaum
</div>
<div class="relateds">
<div style="display:none;">
<a class="simple-footnote" title="Probing the Solar Magnetic Field with a Sun-Grazing Comet, Cooper Downs et al, Science, 7 June 2013." id="return-note-30188-1" href="#note-30188-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="Comet recipe: Make a comet on your own!" id="return-note-30188-2" href="#note-30188-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Why does a comet has a tail and sometimes two?" id="return-note-30188-3" href="#note-30188-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="The pride and fall of warrior comet Lovejoy" id="return-note-30188-4" href="#note-30188-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Comet Lovejoy spotted from the International Space Station" id="return-note-30188-5" href="#note-30188-5"><sup>5</sup></a><br />
<a class="simple-footnote" title="Time-lapse video of comet Lovejoy visiting Earth" id="return-note-30188-6" href="#note-30188-6"><sup>6</sup></a><br />
<a class="simple-footnote" title="On the watch for a solar storm" id="return-note-30188-7" href="#note-30188-7"><sup>7</sup></a><br />
<a class="simple-footnote" title="Could solar wind power Earth?" id="return-note-30188-8" href="#note-30188-8"><sup>8</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-30188-1">Probing the Solar Magnetic Field with a Sun-Grazing Comet, Cooper Downs et al, Science, 7 June 2013. <a href="#return-note-30188-1">&#8617;</a></li><li id="note-30188-2"><a href="http://whyfiles.org/011comets/index.php?g=6.txt">Comet recipe: Make a comet on your own!</a> <a href="#return-note-30188-2">&#8617;</a></li><li id="note-30188-3"><a href="http://www.wired.com/wiredscience/2013/03/why-does-a-comet-have-a-tail/">Why does a comet has a tail and sometimes two?</a> <a href="#return-note-30188-3">&#8617;</a></li><li id="note-30188-4"><a href="http://www.newscientist.com/article/dn22274-astrophile-the-pride-and-fall-of-warrior-comet-lovejoy.html">The pride and fall of warrior comet Lovejoy</a> <a href="#return-note-30188-4">&#8617;</a></li><li id="note-30188-5"><a href="http://triggerpit.com/2012/01/08/comet-lovejoy-iss/">Comet Lovejoy spotted from the International Space Station</a> <a href="#return-note-30188-5">&#8617;</a></li><li id="note-30188-6"><a href="http://blogs.discovermagazine.com/badastronomy/2011/12/27/time-lapse-the-spectacle-of-comet-lovejoy/#.Ua4fH_n70ZA">Time-lapse video of comet Lovejoy visiting Earth</a> <a href="#return-note-30188-6">&#8617;</a></li><li id="note-30188-7"><a href="http://www.nytimes.com/2013/03/19/science/space/on-the-watch-for-a-solar-storm.html?pagewanted=all&#038;_r=0">On the watch for a solar storm</a> <a href="#return-note-30188-7">&#8617;</a></li><li id="note-30188-8"><a href="http://phys.org/news205411403.html">Could solar wind power Earth?</a> <a href="#return-note-30188-8">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>Cancer genetics: Angelina Jolie&#8217;s decision</title>
		<link>http://whyfiles.org/2013/cancer-genetics-angelina-jolies-decision/</link>
		<comments>http://whyfiles.org/2013/cancer-genetics-angelina-jolies-decision/#comments</comments>
		<pubDate>Thu, 30 May 2013 19:29:41 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
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		<category><![CDATA[Angelina Jolie]]></category>
		<category><![CDATA[Antonio Iavarone]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer cure treatment]]></category>
		<category><![CDATA[genetic counseling]]></category>
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		<category><![CDATA[Jessica Joines]]></category>
		<category><![CDATA[Suzanne Mahon]]></category>
		<category><![CDATA[Victoria Raymond]]></category>

		<guid isPermaLink="false">http://whyfiles.org/?p=30105</guid>
		<description><![CDATA[By going public about her preventive mastectomy, Jolie sought to raise awareness of the most radical form of cancer prevention: surgical removal. But how widely does her example apply? Can genetic sequencing help in cancer treatment? <a href="http://whyfiles.org/2013/cancer-genetics-angelina-jolies-decision/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h5>A life-saving surgery raises profile of cancer genes</h5>
<div class="box250"><a href="http://whyfiles.org/wp-content/uploads/2013/05/jolie_tombraider.jpeg" rel="lightbox[30105]"><img class="alignnone size-full wp-image-30117" src="http://whyfiles.org/wp-content/uploads/2013/05/jolie_tombraider.jpeg" alt="Film poster of Lara Croft: Tomb Raider." title="Film poster of Lara Croft: Tomb Raider." width="100%" height="auto" /></a></p>
<div class="attrib">Photo, fair use: <a href="http://en.wikipedia.org/wiki/File:Lara_Croft_film.jpg" rel="lightbox[30105]">Copyright held by the film company or the artist.</a></div>
<div class="caption">Angelina Jolie as Lara Croft: Tomb Raider. The movie was a smash-hit adaptation from a video game.</div>
</div>
<p>On May 14, cinema super-star Angelina Jolie announced that she&#8217;d had a double mastectomy to prevent the family scourge of breast cancer. With a courageous and medically explicit discussion of her odds and her &#8220;medical choice&#8221; to remove both breasts, Jolie splashed the issues of cancer prevention and genetic testing for cancer across the front pages.</p>
<p>Jolie explained her decision in the New York Times:</p>
<div class="blockquote">
<p>&#8220;I am writing about it now because I hope that other women can benefit from my experience. Cancer is still a word that strikes fear into people’s hearts, producing a deep sense of powerlessness. But today it is possible to find out through a blood test whether you are highly susceptible to breast and ovarian cancer, and then take action.&#8221;</p>
</div>
<p>About 10 percent of breast cancers have a genetic component, and two mutations, called BRCA1 and BRCA2, greatly increase the lifetime risk of breast, uterine and other <a href="http://www.cancer.gov/cancertopics/factsheet/Risk/BRCA">cancers</a>.</p>
<p>The BRCA genes normally suppress tumors by repairing broken DNA; when the gene is mutated, both suppression and repair may fail. By itself, the BRCA1 mutation raises the lifetime odds of breast cancer to about 65 percent, about five times the U.S. average. The odds are higher if, as in Jolie&#8217;s case, many relatives have the cancer.</p>
<h3>No longer behind the curtain</h3>
<div class="box400left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/colon_cancer_pat.jpg" rel="lightbox[30105]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/colon_cancer_pat.jpg" alt="Man holds a guitar close to see the strings with a drum set in background." title="Man holds a guitar close to see the strings with a drum set in background." width="100%" height="auto" class="alignnone size-full wp-image-30138" /></a></p>
<div class="attrib">Photo: <a href="http://www.flickr.com/photos/jmsmith000/4532605406/">Jeffrey Smith</a></div>
<div class="caption">Jim Janetski holds his bass guitar close to see the strings. Blinded by an accident long ago, he can see faintly. Janetski, who has struggled with colon cancer for much of his life, says, &#8220;I love music, it&#8217;s helped me through my cancer a lot more than I ever thought.&#8221; Colon cancer, and early-onset tumors, are often hereditary.</div>
</div>
<p>Just as First Lady Betty Ford&#8217;s open discussion of her mastectomy in 1974 brought sunshine to the issue of breast cancer, Jolie&#8217;s announcement has fueled discussion of genetic testing and preventative surgery. &#8220;Our calls have quadrupled in the last week,&#8221; says Suzanne Mahon, a professor of hematology and oncology at the hereditary cancer program at Saint Louis University. &#8220;Angelina Jolie … is high profile, and has definitely raised awareness among patients and the community: &#8216;Is genetic testing something I should consider?&#8217; It begins the conversation about what it means to be a carrier for a gene for cancer predisposition.&#8221;</p>
<p>Mahon appeared on radio and television May 14, and had scheduled 67 patients by May 29, about four times the usual rate. Much of the interest has been among women, but the focus goes beyond BRCA. Mahon says many callers knew they had a risk (she had previously tested their relatives), but still had not phoned for an appointment. &#8220;Jolie&#8217;s announcement gave them the bump to make the call,&#8221; Mahon says. &#8220;That&#8217;s all good.&#8221;</p>
<p>In many cases, Mahon says, people who are worried about breast cancer &#8220;should actually be worried about another hereditary cancer syndrome. When they give us their history, it may be that colon or another cancer is most relevant.&#8221;</p>
<h3>Unusual actress, unusual patient</h3>
<p>Just as Jolie has played unusual women in her movies, it&#8217;s critical to remember that her medical situation is not usual. Carrying the BRCA1 mutation, and having multiple relatives with breast cancer, she said she had 87 percent lifetime odds of breast cancer. Because BRCA1 can affect other organs, she also had a 50 percent chance of ovarian cancer, which she plans to prevent by ovary-removal surgery.</p>
<div class="box250">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/gene_counsel.jpeg" rel="lightbox[30105]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/gene_counsel.jpeg" alt="Counselor talks to visitor with genetic testing results in hand." title="Counselor talks to visitor with genetic testing results in hand." width="100%" height="auto" class="alignnone size-full wp-image-30145" /></a></p>
<div class="attrib">Photo: <a href="http://www.ushersyndrome.nih.gov/join/alltests.html">NIDCC</a></div>
<div class="caption">A researcher at the National Institute on Deafness and Other Communication Disorders provides a genetic counseling session.</div>
</div>
<p>The discussion of genetics and preventive surgery reflects medical progress and changing social norms, says Victoria Raymond, a certified genetic counselor at the University of Michigan Cancer Genetics Clinic. Preventive surgery &#8220;is becoming more mainstream because we are more open about discussing the options. Saying &#8216;breast&#8217; 20 years ago was taboo. It&#8217;s more a conversation to have today.&#8221;</p>
<p>How would a genetic counselor deal with a patient who, like Jolie, faced scary odds of getting cancer? &#8220;When we counsel women,&#8221; Raymond says, &#8220;we try to get a feel for what they need to do to feel more comfortable, to take control of the risk. Some women cannot fathom doing the surgery. They say, &#8216;Let&#8217;s stick with surveillance.&#8217; Some say, &#8216;I cannot sleep at night, cancer is all I can think about.&#8217;&#8221;</p>
<p>&#8220;I don’t think a double mastectomy in this case is radical, but it&#8217;s not for everyone,&#8221; Raymond says.</p>
<p>Jolie had other options, including early detection through intensified screening with MRI and mammograms, or perhaps drugs that could abate the risk of breast cancer (but not as well as mastectomy). Although cost is no object for a rich movie star, we don’t know whether insurance plans would cover prophylactic removal of the breasts, followed by reconstructive surgery.</p>
<h3>Who should get tested</h3>
<p>As we&#8217;ve seen, seeking genetic counseling can be frightful, but it can have benefits even without testing, says Jessica Joines, a certified genetic counselor who specializes in breast and ovarian cancer at the University of Maryland school of medicine. &#8220;One of the biggest misconceptions is that meeting a genetic counselor means you are necessarily going to go down the road of testing. We are here to help discuss the pros and cons, and help the patient make the decision on whether genetic testing is right.&#8221;</p>
<div class="box300left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/gene_growth.png" rel="lightbox[30105]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/gene_growth.png" alt="Graph shows both laboratories offering genetic testing and diseases susceptible to testing increased in last two decades." title="Graph shows both laboratories offering genetic testing and diseases susceptible to testing increased in last two decades." width="100%" height="auto" class="alignnone size-full wp-image-30148" /></a></p>
<div class="attrib"><a href="http://www.ncbi.nlm.nih.gov/projects/GeneTests/static/whatsnew/labdirgrowth.shtml">The Laboratory Directory</a></div>
<div class="caption">As the number of diseases susceptible to genetic testing continues to explode, the count of U.S. and international labs offering in-house testing for inherited disorders began to stabilize in 2003.</div>
</div>
<p>The meeting can be valuable in either case, says Joines. &#8220;We do a very thorough risk assessment, based on the personal and family history, and the risk factors for the cancer in question. Sometimes women with a family history may overestimate the likelihood that they carry a mutation.&#8221;</p>
<p>Even before genetic testing begins, Raymond encourages women to think about how they would use the results. &#8220;That&#8217;s how we want to use genetics: How is it going to change how we take care of someone?&#8221;</p>
<h3>Getting testing</h3>
<p>With Jolie in the headlines, some people may wonder about saving money by ordering genetic tests over the Internet, but that&#8217;s not a smart way to test for a serious disease, Mahon says. &#8220;Unfortunately the wrong tests get ordered. It&#8217;s an emotionally laden situation, and people really should have counseling with a trained, credentialed genetic counselor.&#8221;</p>
<p>In 2006, the <a href="http://www.genome.gov/19518344">Government Accountability Office</a> found that &#8220;direct to consumer&#8221; genetic tests were misleading.</p>
<p>An informed approach to genetic testing must assess the risks and benefits, and explore insurance issues like preauthorization and coverage, and results are best presented in person, Mahon says. &#8220;If the result are positive, we schedule 90 minutes, even multiple appointments&#8221; to discuss the results.</p>
<p>Once a mutation is detected, relatives, depending on their relationship to the patient, may need to consider counseling and testing, Mahon says. &#8220;And there are questions about insurance discrimination. Do you need to up your life insurance? There is a whole host of issues.&#8221;</p>
<p>Federal law <a href="http://www.genome.gov/10002077">prohibits</a> insurance and employment discrimination based on a genetic test.</p>
<h3>Definitive? Not always…</h3>
<p>Although Jolie&#8217;s case was pretty clear-cut, genetic testing does not always give definitive results. Many patterns of hereditary disease, for example, have not been tracked to specific genes. &#8220;One of the biggest challenges, when you are working with a family who you feel does have a hereditary component to cancer, is when you do all this testing, and the result comes back negative,&#8221; says Joines.</p>
<p>Plenty of gray areas exist, even with the well-known BRCA genes. Not every woman with a harmful BRCA1 or BRCA2 mutation will develop breast and/or ovarian cancer, and not every cancer in these families is linked to these <a href="http://www.cancer.gov/cancertopics/factsheet/Risk/BRCA">mutations</a>.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/brca_chart.jpg" rel="lightbox[30105]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/brca_chart.jpg" alt="Graph shows BRCA mutations carriers' risks of breast and ovarian cancers are much higher than general population." title="Graph shows BRCA mutations carriers' risks of breast and ovarian cancers are much higher than general population." width="100%" height="auto" class="alignnone size-full wp-image-30132" /></a></p>
<div class="attrib">The Why Files. Data from <a href="http://www.ct.gov/dph/lib/dph/genomics/hp2020_actionproj_ca_genomics_best_practices.pdf">Connecticut Department of Public Health</a></div>
<div class="caption">The BRCA mutations sharply increase the risk of breast and ovarian cancers, and men are not immune.</div>
</div>
<p>Even a failure to find a genetic abnormality can be confusing. &#8220;It takes a lot of education, counseling, to convey that the negative result does not mean there is nothing to worry about, that there is not something genetic in the family,&#8221; Joines adds. &#8220;There are causes we don’t know. Probably one-third of hereditary breast cancers are due to rare or unknown genes.&#8221;</p>
<p>Even a field as number-rich as genetics can stumble when it comes time to say, &#8220;You have X percent lifetime chance of getting cancer Y.&#8221; Variations in individual lifestyle, environment and other genes can all play a role, and so it can be difficult &#8220;to give one absolute risk number,&#8221; Joines adds. &#8220;A lot of times, we give a range for the number; we feel that&#8217;s most accurate. Inherent in genetic testing is a certain amount of uncertainty. You have to make a decision on percentage chances, and you need to be comfortable with the decision.&#8221;</p>
<h3>Genetic testing: treatment aid?</h3>
<div class="box300">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/fgfr_tacc.jpg" rel="lightbox[30105]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/fgfr_tacc.jpg" alt="Proteins colored red intertwine with cellular nuclei colored blue." title="Proteins colored red intertwine with cellular nuclei colored blue." width="100%" height="auto" class="alignnone size-full wp-image-30150" /></a></p>
<div class="attrib">Photo: <a href="http://www.newswise.com/articles/study-pinpoints-a-genetic-cause-of-most-lethal-brain-tumor-may-lead-to-new-treatment">Anna Lasorella and Antonio Iavarone</a>, Columbia University Medical Center</div>
<div class="caption">An abnormal protein made by a fused gene causes glioblastoma, a deadly brain cancer.</div>
</div>
<p>The BRCA1 mutation that caused Angelina Jolie to choose surgery resides in reproductive cells. Because it is copied into every tissue, people carrying the mutation are prone to cancer in several tissues. But in the vast majority of human tumors, the genetic abnormality is local &#8212; due, perhaps, to radiation, chemical assault or spontaneous mutation.</p>
<p>In glioblastoma, the most common and aggressive brain cancer, three percent of cases result from a genetic abnormality called gene fusion, says Antonio Iavarone, a professor of pathology and neurology at Columbia University.</p>
<p>Gene fusion means just what it says: Two genes splice together and start producing a deadly protein.</p>
<p>When Iavarone injected the fusion gene into mice, &#8220;100 percent of those mice get very aggressive brain tumors,&#8221; he says. &#8220;The fusion gene [working through the fusion protein] causes the cancer.&#8221;</p>
<p>Last year, Iavarone reported<a class="simple-footnote" title="Transforming Fusions of FGFR and TACC Genes in Human Glioblastoma, Devendra Singh et al, Science, 7 Sept. 2012" id="return-note-30105-1" href="#note-30105-1"><sup>1</sup></a> that drugs that interfere with the fusion protein dramatically slowed the growth of glioblastomas in mice.</p>
<p>&#8220;The possibility to treat patients who were selected for the presence of the fusion gene was there since the first moment,&#8221; Iavarone says. &#8220;After our work was published, I was hoping that a clinical trial would follow very rapidly. But these drugs would only work for patients who have the fusion gene; it does not makes sense to give the drugs to other patients, so the first step is to screen … for that three percent.&#8221;</p>
<div class="box250left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/glioblast.jpg" rel="lightbox[30105]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/glioblast.jpg" alt="Slice of human brain with a tumor in one hemisphere." title="Slice of human brain with a tumor in one hemisphere." width="100%" height="auto" class="alignnone size-full wp-image-30152" /></a></p>
<div class="attrib">Photo: <a href="http://commons.wikimedia.org/wiki/File:Glioblastoma_macro.jpg" rel="lightbox[30105]">Sbrandner</a></div>
<div class="caption">Brain slice shows pathology of glioblastoma multiforme, one of the most deadly human cancers.</div>
</div>
<h3>A new view of clinical trials</h3>
<p>A simple DNA test could identify the fused genes, he says. &#8220;We know how to block the activity of this protein with drugs that are already available [although not approved for marketing] from pharmaceutical companies.&#8221; Unfortunately, he says, drug companies want to forego screening and give the candidate drug to everybody in the trial, but that is a recipe for failure. &#8220;The vast majority of patient will not benefit.&#8221;</p>
<p>And so a clinical trial has not begun, Iavarone says.</p>
<div class="box200">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/gene_cost_per_mega.jpg" rel="lightbox[30105]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/gene_cost_per_mega.jpg" alt="Graph shows cost of DNA sequencing decreased steadily from 2001 to 2013." title="Graph shows cost of DNA sequencing decreased steadily from 2001 to 2013." width="100%" height="auto" class="alignnone size-full wp-image-30154" /></a></p>
<div class="attrib"><a href="http://www.genome.gov/sequencingcosts/">The National Human Genome Research Institute</a></div>
<div class="caption">The plunging cost of sequencing has enabled the use of genetics in cancer prevention and treatment. In 2008, the price drop began to exceed Moore&#8217;s law, which describes the accelerating pace of computer processing. In 12 years, the cost has fallen by a factor of 100,000; one &#8220;megabase&#8221; is one million units of genetic code.</div>
</div>
<p>Because the same gene fusion occurs in other cancers, Iavarone says it no longer makes sense to automatically categorize cancers by their source organ. Ideally, &#8220;You don’t treat tumors because of where they originate, but based on their molecular content, the genetic alterations.&#8221;</p>
<p>Eventually, Iavarone says, &#8220;Breast tumors may be treated exactly like tumors from the brain, as long as they have the same genetic alterations. This is really the genomic revolution in cancer research: using new sequencing technology to understand which patient can benefit from a certain drug.&#8221;</p>
<p>Ever since 2003, when the first human genome was decoded, we&#8217;ve been waiting for the health benefits touted by supporters of the $3-billion genome project. Finally, Iavarone says, all the knowledge and equipment stimulated by that project are starting to pay practical benefits.</p>
<p>Jolie&#8217;s public decision, Iavarone says, &#8220;Underscores the possibility of preventing cancer by using genomic knowledge. In brain tumors, and unfortunately for the vast majority of cancers, we don’t have the opportunity, there is no germ-line mutation, we can&#8217;t say you are at risk. But we are starting to see treatments, and that is another opportunity raised by genomic knowledge.&#8221;</p>
<div id="writer">&#8211; David J. Tenenbaum</div>
<div class="relateds">
<div style="display: none;"><a class="simple-footnote" title="ICYMI: Angelina Jolie&#8217;s revelation of her mastectomy" id="return-note-30105-2" href="#note-30105-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Is your lifetime risk of breast cancer really 1 in 8?" id="return-note-30105-3" href="#note-30105-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="Breast cancer fact sheet: Charts and maps" id="return-note-30105-4" href="#note-30105-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="I&#8217;m a Lynch syndrome mutant. What does it mean?" id="return-note-30105-5" href="#note-30105-5"><sup>5</sup></a><br />
<a class="simple-footnote" title="Life-saving DNA test overlooked in rise of colon cancer" id="return-note-30105-6" href="#note-30105-6"><sup>6</sup></a><br />
<a class="simple-footnote" title="Help me understand genetics" id="return-note-30105-7" href="#note-30105-7"><sup>7</sup></a><br />
<a class="simple-footnote" title="Gene testing FAQ" id="return-note-30105-8" href="#note-30105-8"><sup>8</sup></a><br />
<a class="simple-footnote" title="From $5,000 to $0.1: What changed DNA sequencing costs?" id="return-note-30105-9" href="#note-30105-9"><sup>9</sup></a><br />
<a class="simple-footnote" title="To know or not to know: Genetic testing results can be transformative as well as toxic" id="return-note-30105-10" href="#note-30105-10"><sup>10</sup></a><br />
<a class="simple-footnote" title="Study pinpoints a genetic cause of most lethal brain tumor &#8212; may lead to new treatment" id="return-note-30105-11" href="#note-30105-11"><sup>11</sup></a></div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-30105-1">Transforming Fusions of FGFR and TACC Genes in Human Glioblastoma, Devendra Singh et al, Science, 7 Sept. 2012 <a href="#return-note-30105-1">&#8617;</a></li><li id="note-30105-2"><a href="http://www.nytimes.com/2013/05/14/opinion/my-medical-choice.html">ICYMI: Angelina Jolie&#8217;s revelation of her mastectomy</a> <a href="#return-note-30105-2">&#8617;</a></li><li id="note-30105-3"><a href="http://www.worldwidebreastcancer.com/learn/breast-cancer-statistics-worldwide/">Is your lifetime risk of breast cancer really 1 in 8?</a> <a href="#return-note-30105-3">&#8617;</a></li><li id="note-30105-4"><a href="http://globocan.iarc.fr/factsheets/cancers/breast.asp">Breast cancer fact sheet: Charts and maps</a> <a href="#return-note-30105-4">&#8617;</a></li><li id="note-30105-5"><a href="http://www.huffingtonpost.com/danielle-ripleyburgess/hand-me-a-cape-im-a-lynch_b_3315087.html">I&#8217;m a Lynch syndrome mutant. What does it mean?</a> <a href="#return-note-30105-5">&#8617;</a></li><li id="note-30105-6"><a href="http://www.bloomberg.com/news/2012-10-24/life-saving-dna-test-overlooked-in-rise-of-colon-cancer.html">Life-saving DNA test overlooked in rise of colon cancer</a> <a href="#return-note-30105-6">&#8617;</a></li><li id="note-30105-7"><a href="http://ghr.nlm.nih.gov/handbook">Help me understand genetics</a> <a href="#return-note-30105-7">&#8617;</a></li><li id="note-30105-8"><a href="http://www.ornl.gov/sci/techresources/Human_Genome/medicine/genetest.shtml">Gene testing FAQ</a> <a href="#return-note-30105-8">&#8617;</a></li><li id="note-30105-9"><a href="http://www.genome.gov/sequencingcosts/">From $5,000 to $0.1: What changed DNA sequencing costs?</a> <a href="#return-note-30105-9">&#8617;</a></li><li id="note-30105-10"><a href="http://www.psychologytoday.com/articles/201105/know-or-not-know">To know or not to know: Genetic testing results can be transformative as well as toxic</a> <a href="#return-note-30105-10">&#8617;</a></li><li id="note-30105-11"><a href="http://www.newswise.com/articles/study-pinpoints-a-genetic-cause-of-most-lethal-brain-tumor-may-lead-to-new-treatment">Study pinpoints a genetic cause of most lethal brain tumor &#8212; may lead to new treatment</a> <a href="#return-note-30105-11">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>The cockroach</title>
		<link>http://whyfiles.org/2013/the-cockroach/</link>
		<comments>http://whyfiles.org/2013/the-cockroach/#comments</comments>
		<pubDate>Thu, 23 May 2013 20:55:30 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
				<category><![CDATA[All]]></category>
		<category><![CDATA[Behavior of organisms]]></category>
		<category><![CDATA[Bio brainstorms]]></category>
		<category><![CDATA[Biology]]></category>
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		<category><![CDATA[Regulation and behavior]]></category>
		<category><![CDATA[Science as Inquiry]]></category>
		<category><![CDATA[Understanding about scientific inquiry]]></category>
		<category><![CDATA[Coby Schal]]></category>
		<category><![CDATA[cockroach]]></category>
		<category><![CDATA[insect evolution]]></category>
		<category><![CDATA[mutation]]></category>
		<category><![CDATA[olfactory]]></category>
		<category><![CDATA[taste receptor]]></category>
		<category><![CDATA[University of Wisconsin Madison UW-Madison]]></category>
		<category><![CDATA[Walter Goodman]]></category>

		<guid isPermaLink="false">http://whyfiles.org/?p=29970</guid>
		<description><![CDATA[An extermination trick that married insecticide with sugar worked for a while -- but then suddenly lost its power against roaches. Now science tells us why, as it highlights once again how human actions affect natural selection. <a href="http://whyfiles.org/2013/the-cockroach/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h5>Eating organic? Roaches disdain key “junk-food&#8221; sweetener</h5>
<div class="box400"><video id='a32e0ab2' class='sublime' width='400' height='300' poster='http://whyfiles.org/wp-content/uploads/2013/05/pb_and_j_still.jpg' preload='none' data-uid='a32e0ab2' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/05/pb_and_j.mov' />
</video>
</p>
<div class="attrib">Video courtesy of Ayako Wada-Katsumata</div>
<div class="caption">Even with fine doilies and silverware, &#8220;glucose-averse&#8221; roaches shun jelly. Their normal (&#8220;wild-type&#8221;) relatives cluster around the jelly, as you&#8217;d expect.</div>
</div>
<p>About 30 years ago, many cockroach haters began to use baited traps that blended high-fructose corn syrup with insecticide. But within seven or eight years, the traps started losing their clout.</p>
<p>&#8220;We first assumed that cockroaches were becoming resistant to insecticide, &#8220;says Coby Schal, a professor of entomology at North Carolina State University. &#8220;That&#8217;s been discovered in more than 1,000 species.&#8221;</p>
<p>Upon a closer look, scientists found that the roaches were turning up their noses at glucose, a primary component in the cheap corn syrup that was used to attract roaches to the poisonous bait.</p>
<p>This week, Schal publishes an explanation for the change: a mutation in German cockroaches that alters taste-sensitive nerve cells. The mutation causes these cells to perceive glucose as bitter, not sweet, so the mutated roaches, no dummies, disdain bait containing glucose.</p>
<div class="box250left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/cockroach_face_labelled.jpg" rel="lightbox[29970]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/cockroach_face_labelled.jpg" alt="A portrait of cockroach face, parts labelled, showing antennae extending upward." title="A portrait of cockroach face, parts labelled, showing antennae extending upward." width="100%" height="auto" class="alignnone size-full wp-image-30043" /></a></p>
<div class="attrib">Image courtesy Ayako Wada-Katsumata and Andrew Ernst</div>
<div class="caption">The head of a male German cockroach shows a straggle of sensory hairs. Glucose aversion was studied only in the head, where taste hairs are concentrated. Other sensory hairs decorate the thorax, wings and legs.</div>
</div>
<p>The German cockroach <i>Blattella germanica</i> is small and ubiquitous in buildings. &#8220;It does not have a natural world,&#8221; Schal says. &#8220;You can&#8217;t find them outside human structures,&#8221; such as barns, restaurants, schools, and especially homes.</p>
<h3>Three cheers for glucose!</h3>
<p>Normally, animals love glucose, not hate it, Schal says. &#8220;It&#8217;s no wonder that plants put glucose and fructose [another simple sugar] into nectar, so insects will pollenate them.&#8221;</p>
<p>But bitter trumps sweet, because bitter compounds are often toxic. &#8220;This makes a lot of sense,&#8221; Schal adds. &#8220;If you taste something bitter that could kill you, it would make sense to ignore any sweet taste.&#8221;</p>
<p>To determine why these roaches shun glucose, Schal, Jules Silverman and Ayako Wada-Katsumata made electrical measurements of sensory hairs near the mouth, which contain neural cells variously attuned to sugar, bitter, water or salt. &#8220;We put an electrode over the top of the hair and recorded the neural responses,&#8221; says Schal. Because each type of nerve cell gives a typical impulse, it was possible to distinguish the firing of sugar cells.</p>
<div class="box250">
<video id='238db0b6' class='sublime' width='250' height='166' poster='http://whyfiles.org/wp-content/uploads/2013/05/s4_movie_still.jpg' preload='none' data-uid='238db0b6' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/05/glucose_avers.mp4' />
	<source src='http://whyfiles.org/wp-content/uploads/2013/04/vandewaaletal_cellular.m4v' />
</video>
</p>
<div class="attrib">Video courtesy of Ayako Wada-Katsumata</div>
<div class="caption">This mutated German cockroach gets a glob of glucose. Too bad sugar tastes bitter to it: Is this the original Mr. Yuk?</div>
</div>
<p>Among glucose-averse roaches, Schal found, a mutation placed a glucose receptor on the bitter neuron, giving sugar the bitter taste that&#8217;s obvious in the movie.</p>
<p>Loathing glucose aids survival, but only when the sugar comes with a dollop of insecticide, Schal says. Otherwise, &#8220;this cockroach would be at a huge selective disadvantage, as they would not have access to the calorie-rich diet&#8221; that cockroaches crave.</p>
<p>&#8220;To the German cockroach,&#8221; he says, &#8220;that Krispy Kreme donut on the counter is a bonanza, but if it evolves this behavior, it can&#8217;t touch that Krispy Kreme.&#8221;</p>
<div class="sidebar">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/roach_sidebar.jpg" rel="lightbox[29970]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/roach_sidebar.jpg" alt="Closeup of brown cockroach." title="Closeup of brown cockroach." width="100%" height="auto" class="alignnone size-full wp-image-30064" /></a></p>
<h3>Cockroaches: just disgusting, or dangerous too??</h3>
<p>Our innate disgust of cockroaches is more than creepy-crawlies paranoia; these arthropods can harm us via allergies and infectious disease.</p>
<h2>Disease Transmission</h2>
<p>Cockroaches can ferry pathogens from their filthy habitat into your kitchen. They also ingest microbes while grooming, says Schal. &#8220;We have shown that the digestive tract of the cockroach contains microbes that represent the environment it lives in.&#8221;</p>
<h2>Allergies</h2>
<p>As a cockroach sheds feces, saliva, eggs and exoskeleton into the environment, those bits can trigger allergic asthma. In the United States:</p>
<div class="bullets">
<p>* <strong>26</strong> percent of the population is allergic to the German cockroach;</p>
<p>* <strong>63</strong> percent of homes contain cockroach allergens; and</p>
<p>* <strong>44</strong> percent of living room floors have cockroach allergens.</p>
<div class="caption">Data: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440774/">Environmental Health Perspectives, 114(4), 522.</a></div>
</div>
</div>
<h3>Sweet is beautiful &#8212; or not…</h3>
<p>While mutations usually destroy specific functions, Schal notes, the cockroach mutation actually confers a new ability. &#8220;Normally, the gene is non-functional, but in this case the roach hasn’t lost its sweet tooth, it&#8217;s gained a bitter tooth for glucose.&#8221;</p>
<p>At the same time, the roaches&#8217; sweet receptors become less reactive to glucose. &#8220;It&#8217;s a two-step whammy,&#8221; says Schal. &#8220;They now respond to glucose as bitter, and there is a suppression of the response to glucose as sweet.&#8221;</p>
<p>This flexibility is another reason to respect roaches, says Schal. &#8220;I have been working with them for 30 years, mostly involving the arms race between roaches and us. We lob something at them, and they lob something twice as big back at us.&#8221;</p>
<p>The roach&#8217;s rapid response to the new baiting strategy is sobering, says Walter Goodman, a professor of entomology at the University of Wisconsin-Madison. &#8220;We have not been using baits all that long. The strong selective pressures put on the wild-type roach have led to resistance via the antennal neurons in less than 50 years (possibly 200 generations).&#8221;</p>
<p>Although the result may look like learning &#8212; after all, the roaches have changed their behavior to survive their new environment, &#8220;There is no learning involved,&#8221; Goodman says. &#8220;The change is in the antenna receptors, not in the brain.&#8221;</p>
<p>And these mutations are making some baits obsolete, Goodman adds.</p>
<p>Replacing glucose with another sugar could reinvigorate roach traps, Schal says. &#8220;But fructose is very expensive, and maltose is used in beer. Cockroaches love maltose, but we don’t want them competing with beer-makers.&#8221;</p>
<div id="writer">
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/lil_dave_roach.jpg" alt="" width="70" height="35" align="text-top" /> David J. Tenenbaum</p>
</div>
<div class="caption">
<p>All cockroach images not attributed to scientist are from <a href="http://www.shutterstock.com/cat.mhtml?lang=en&#038;search_source=search_form&#038;version=llv1&#038;anyorall=all&#038;safesearch=1&#038;searchterm=german+cockroach&#038;search_group=">Shutterstock</a>.</p>
</div>
<div class="relateds">
<div style="display: none;"><a class="simple-footnote" title="Changes in Taste Neurons Support the Emergence of an Adaptive Behavior in Cockroaches, by A. Wada-Katsumata et al, Science 24 May 2013." id="return-note-29970-1" href="#note-29970-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="National prevalence and exposure risk for cockroach allergen in US households, by R. D. Cohn et al, Environmental Health Perspectives, 2006" id="return-note-29970-2" href="#note-29970-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="[Video] Did you know cockroaches love to be clean?" id="return-note-29970-3" href="#note-29970-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="Explore 82 fun facts about cockroach" id="return-note-29970-4" href="#note-29970-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Man died after cockroach eating contest" id="return-note-29970-5" href="#note-29970-5"><sup>5</sup></a><br />
<a class="simple-footnote" title="Some cockroaches glow in the dark!" id="return-note-29970-6" href="#note-29970-6"><sup>6</sup></a><br />
<a class="simple-footnote" title="Cockroach superpower: They recycle nitrogen inside their bodies" id="return-note-29970-7" href="#note-29970-7"><sup>7</sup></a></div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29970-1">Changes in Taste Neurons Support the Emergence of an Adaptive Behavior in Cockroaches, by A. Wada-Katsumata et al, Science 24 May 2013. <a href="#return-note-29970-1">&#8617;</a></li><li id="note-29970-2"><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440774/">National prevalence and exposure risk for cockroach allergen in US households, by R. D. Cohn et al, Environmental Health Perspectives, 2006</a> <a href="#return-note-29970-2">&#8617;</a></li><li id="note-29970-3"><a href="http://www.youtube.com/watch?v=YrvXBij00EU">[Video] Did you know cockroaches love to be clean?</a> <a href="#return-note-29970-3">&#8617;</a></li><li id="note-29970-4"><a href="http://www.bio.umass.edu/biology/kunkel/cockroach_faq.html">Explore 82 fun facts about cockroach</a> <a href="#return-note-29970-4">&#8617;</a></li><li id="note-29970-5"><a href="http://www.huffingtonpost.com/2012/10/08/edward-archbold-roach-eating-contest_n_1949589.html">Man died after cockroach eating contest</a> <a href="#return-note-29970-5">&#8617;</a></li><li id="note-29970-6"><a href="http://news.mongabay.com/2012/1114-rudolph-bioluminescent-roach.html?utm_source=feedly">Some cockroaches glow in the dark!</a> <a href="#return-note-29970-6">&#8617;</a></li><li id="note-29970-7"><a href="http://www.wired.com/wiredscience/2009/10/cockroach-recycling/">Cockroach superpower: They recycle nitrogen inside their bodies</a> <a href="#return-note-29970-7">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>Toms River</title>
		<link>http://whyfiles.org/2013/toms-river/</link>
		<comments>http://whyfiles.org/2013/toms-river/#comments</comments>
		<pubDate>Tue, 21 May 2013 19:07:58 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
				<category><![CDATA[Book Reviews]]></category>
		<category><![CDATA[book reviews]]></category>
		<category><![CDATA[Cancer]]></category>
		<category><![CDATA[cancer cluster]]></category>
		<category><![CDATA[chemical pollution]]></category>
		<category><![CDATA[Dan Fagin]]></category>
		<category><![CDATA[Toms River]]></category>

		<guid isPermaLink="false">http://whyfiles.org/?p=29957</guid>
		<description><![CDATA[An outbreak of leukemia in New Jersey led to a long investigation and cleanup, but nobody was ever able to conclusively pin the blame on the chemical companies that had dumped their waste in unlined pits.  <a href="http://whyfiles.org/2013/toms-river/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3> Toms River</h3>
<div class="caption"><strong>Dan Fagin</strong> &bull; Bantam, 2013, 538 pp.</div>
<div class="box300">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/tomsriver.png" rel="lightbox[29957]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/tomsriver.png" alt="Book cover: &#039;Toms River&#039;, by Dan Fagin" width="300" height="300" class="alignnone size-full wp-image-29959" /></a>
</div>
<p>
  In 1952, the Toms River Chemical Plant opened a vast factory in rural New Jersey, dedicated to making dyes based on a coal product, anthraquinone. Prized for bright, color-fast colors, the manufacturing process also produced prodigious streams of toxic waste.</p>
<p>
  As the plant, eventually renamed Ciba after its owner, the Swiss chemical giant, prospered, streams of waste filtered into the sandy soil and reached the Atlantic through a leaky pipe. Less obvious at the time, a field of municipal water wells a mile or so from the plant fence were contaminated by midnight dumping of barrels of toxic trash from chemical giant Union Carbide.</p>
<p>
  You might guess the outcome: A cancer cluster, a town divided against itself, a massive struggle pitting people who felt victimized against a truculent, entrenched corporation. Caught in the middle: state and federal regulators.</p>
<p>
  Toms River details the decade-long effort to unravel and repair the environmental damage left by the Ciba plant, which closed in 1996. It explores the 1856 discovery of a bright purple residue that &#8220;clung flawlessly to a cotton cloth,&#8221; and the rise of the Swiss chemical industry, together with its constant need to dispose of toxic byproducts.</p>
<p>
  In parallel, author Dan Fagin describes the fitful progress of toxicology and epidemiology &#8212; disciplines that were tested so strongly at Toms River.</p>
<p>
  In 1700, for example, the Italian physician Ramazzini published Diseases of Workers, based on his visits to workplaces, which &#8220;included startlingly accurate descriptions of diseases associated with fifty-two occupations, from lead poisoning of potters and mercury poisoning of mirror makers to the hunched spines and overtaxed minds of sedentary &#8216;learned men.&#8217;&#8221;</p>
<p>
  The signature ailment at Toms River, childhood leukemia, afflicted families living near the plant. Repeated investigations of this &#8220;cancer cluster,&#8221; however, could not quite pin down the source. Although there was obvious aquifer pollution, nobody had stored samples of past drinking water, so it was impossible to know how much poison they contained. </p>
<p>
  And here is the result, as Fagin describes it: &#8220;By the late 1980s, there was no avoiding the unsetting conclusion: [Investigating] neighborhood cancer clusters appeared to be a fool&#8217;s errand, and a source of perpetual embarrassment to the agencies that conducted them and the politicians who had to defend their unsatisfying results.&#8221;</p>
<p>
  Toms River the book is anything but unsatisfying. Fagin weaves &#8212; without a bit of maudlin grandstanding &#8212; strands of chemical invention, corporate behavior, dedicated doctors, nurses and especially citizens, family tragedy, and the invention of epidemiology.<br />
  The result is a stunning achievement: A historical-scientific page turner, all fact, all the time!</p>
<div id="writer">
<p>
David J. Tenenbaum</p>
</div>
]]></content:encoded>
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		<title>Ancient water = ancient habitat?</title>
		<link>http://whyfiles.org/2013/ancient-water-ancient-habitat/</link>
		<comments>http://whyfiles.org/2013/ancient-water-ancient-habitat/#comments</comments>
		<pubDate>Thu, 16 May 2013 21:21:02 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
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		<category><![CDATA[water]]></category>

		<guid isPermaLink="false">http://whyfiles.org/?p=29844</guid>
		<description><![CDATA[Geologic dating shows that water has been trapped more than 2 kilometers underground since before the Cambrian explosion. This water contains chemicals that support bacteria in other places. Could the deep biosphere contain relics of the most primitive life? Could such life exist on Mars? <a href="http://whyfiles.org/2013/ancient-water-ancient-habitat/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h5>Study uncorks possibility that ancient water supports ancient life</h5>
<div class="box400">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/water2.jpg" rel="lightbox[29844]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/water2.jpg" alt="Bubbles rising through water above highly oxidized orange iron surface." title="Bubbles rising through water above highly oxidized orange iron surface." width="100%" height="auto" class="alignnone size-full wp-image-29874" /></a></p>
<div class="attrib">Photo: J Telling</div>
<div class="caption">Gas bubbles from briny water emerging from the floor of a deep mine. The water&#8217;s chemical composition could feed microbes, if any are living here, 2.4 kilometers underground.
</div>
</div>
<p>Water gushing from a deep mine in Ontario has been isolated from the surface for more than a billion years, a Canadian-United Kingdom scientific group  reported today. Intriguingly, the water contains hydrogen and methane, which support bacteria and bigger organisms in the ocean depths, another location where sunlight, life&#8217;s usual source of energy, is unknown.</p>
<p>
  Several analyses indicate that the mine water has been underground for 1.5 to 2.5 billion years, more or less.</p>
<p>
  Tests for bacteria in the Ontario samples are not complete, but scientists have already found microbes trapped for millions of years in a South African gold mine.</p>
<p>
  The new study could expand the size and age of the immense bacterial realm beneath our feet, and could even help justify the search for life inside Mars, where geologically quiet regions may retain the liquid water that dominated the planet&#8217;s surface billions of years ago.</p>
<p>
  In deducing how long the water has been isolated from the surface, the researchers focused on inert gases like helium, xenon and argon, which abstain from chemical reactions.</p>
<div class="box400left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/map_timmons_studysite.jpg" rel="lightbox[29844]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/map_timmons_studysite.jpg" alt="Water sampled in the Timmins mine, in Ontario, flows due to the immense pressure from cracks and crevices in the 'basement rock.'" title="Water sampled in the Timmins mine, in Ontario, flows due to the immense pressure from cracks and crevices in the 'basement rock.'" width="100%" height="auto" class="alignnone size-full wp-image-29871" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">Water sampled in the Timmins mine, in Ontario, flows due to the immense pressure from cracks and crevices in the &#8220;basement rock.&#8221;</div>
</div>
<p>
  The isotopes of an element are chemically identical but have different physical properties, such as mass. Particular isotopes can only come from a limited number of sources, and do not undergo radioactive decay.</p>
<p>
  The ultimate source of helium-4 is uranium, and measuring helium-4 can produce an age for the fluid, says project leader Chris Ballentine of the University of Manchester. &#8220;We know the concentration of uranium in these rocks, and can calculate that it would take X number of years for this level of helium-4 to build up.&#8221;</p>
<div class="box400">
<video id='3e8a22f3' class='sublime' width='400' height='385' poster='http://whyfiles.org/wp-content/uploads/2013/05/movie_splash.jpg' preload='none' data-uid='3e8a22f3' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/05/Collecting.mp4' />
</video>
</p>
<div class="attrib">Credit: L. Li</div>
<div class="caption">Look but don’t drink: The water coming up from boreholes in the Ontario mine, &#8220;Looks very appetizing, it&#8217;s crystal clear, sparkling,&#8221; says Ballentine, &#8220;but the gas mixture is odd; it&#8217;s methane, hydrogen, helium rich.&#8221;</div>
</div>
<p>
  The researchers calculated that the accumulation of helium-4 would require about 1.14 billion years. Argon-40, another stable isotope, derived from potassium, would require 1.5 billion years. Those dates could be off by hundreds of millions of years in either direction.</p>
<p>
  Three xenon isotopes provided data on isolation from the surface. &#8220;Other workers have been looking at how the xenon isotope composition in the atmosphere has evolved,&#8221; says Ballentine. &#8220;A small amount of the atmosphere is dissolved in water when it is last at the surface, and when the water percolates into the ground, it takes that signature with it.&#8221;</p>
<div class="box400left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/tubeworm.jpg" rel="lightbox[29844]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/tubeworm.jpg" alt="Many cream tubular appendages containing light pink worms in underwater environment." title="Many cream tubular appendages containing light pink worms in underwater environment." width="100%" height="auto class="alignnone size-full wp-image-29896" /></a></p>
<div class="attrib">Lophelia II 2010 Expedition, NOAA-OER/BOEMRE.<a href="http://oceanexplorer.noaa.gov/facts/photochemo.html">NOAA</a></div>
<div class="caption">Close-up of a tubeworm located deep in the Gulf of Mexico. Bacteria living in the tubeworms metabolize sulfide compounds, creating &#8220;chemosynthetic energy&#8221; that sustains both organisms.</div>
</div>
<p>
  The final step is to match the xenon concentration in the underground water to a time when the same concentration was present in the atmosphere; this process yielded an age of about 1.5 billion years. </p>
<h3>Answering the &#8220;so-what?&#8221; question </h3>
<p>
  The study gives a new view of how water behaves deep underground, says Ballentine, who studies fluid migration. Knowing how fluids form and move will, for example, shed light on what may happen if carbon dioxide gas is pumped underground to reduce greenhouse gas pollution.</p>
<p>
  Although the ancient water contains methane and hydrogen, which support bacteria in some locations, the &#8220;million dollar question&#8221; remains to be answered, Ballentine says. Nobody yet knows whether life is present in the water from the Ontario mine. Still, he adds, &#8220;We have found an environment that can host life, support it and nurture it for hundreds of millions, or billions of years.&#8221;</p>
<p>
  Because the ancient rock in the Ontario mine is located on the Canadian  Shield, where earthquakes and volcanism are absent, &#8220;the most important implication is the extent of time that these environments can support life… without being disrupted.&#8221;</p>
<p>
  It&#8217;s almost certain that similar locations exist elsewhere, Ballentine adds. &#8220;Eventually we hope to find a spectrum of ages that would allow us to … start building a far better understanding of how life finds these pockets, evolves in them, and survives in them.&#8221;</p>
<p>
  Admittedly, that statement is premised on a big &#8220;if.&#8221; As Ballentine concedes,  &#8220;We don’t know if there is there life down there, or even what it would look like.&#8221;</p>
<div id="writer">
<p>&#8211; David J. Tenenbaum</p>
</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="Deep fracture fluids isolated in the crust since Precambrian era, G Holland et al, Nature 16 May 2013." id="return-note-29844-1" href="#note-29844-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="How do some organisms survive without sunlight?" id="return-note-29844-2" href="#note-29844-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Life on Mars?Read about the evidence." id="return-note-29844-3" href="#note-29844-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="Another newsy look at the billion year old water" id="return-note-29844-4" href="#note-29844-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Billions of years old: The origin of life" id="return-note-29844-5" href="#note-29844-5"><sup>5</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29844-1"><a href="http://dx.doi.org/10.1038/nature12127">Deep fracture fluids isolated in the crust since Precambrian era</a>, G Holland et al, Nature 16 May 2013. <a href="#return-note-29844-1">&#8617;</a></li><li id="note-29844-2"><a href="http://oceanexplorer.noaa.gov/facts/photochemo.html">How do some organisms survive without sunlight?</a> <a href="#return-note-29844-2">&#8617;</a></li><li id="note-29844-3">Life on Mars?<a href="http://www.telegraph.co.uk/science/space/9814256/Strongest-evidence-yet-to-there-being-life-on-Mars.html">Read about the evidence.</a> <a href="#return-note-29844-3">&#8617;</a></li><li id="note-29844-4">Another <a href="http://www.nature.com/news/reservoir-deep-under-ontario-holds-billion-year-old-water-1.12995">newsy look at the billion year old water</a> <a href="#return-note-29844-4">&#8617;</a></li><li id="note-29844-5">Billions of years old: <a href="http://evolution.berkeley.edu/evosite/evo101/IIE2aOriginoflife.shtml">The origin of life</a> <a href="#return-note-29844-5">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>A new iron age?</title>
		<link>http://whyfiles.org/2013/a-new-iron-age/</link>
		<comments>http://whyfiles.org/2013/a-new-iron-age/#comments</comments>
		<pubDate>Thu, 09 May 2013 19:55:52 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
				<category><![CDATA[Abilities of technological design]]></category>
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		<guid isPermaLink="false">http://whyfiles.org/?p=29769</guid>
		<description><![CDATA[Smelters refine aluminum ore, but not iron ore, with electricity.  A new electrolytic process for refining iron ore could save vast amounts of greenhouse gases. <a href="http://whyfiles.org/2013/a-new-iron-age/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3>Iron and steel: The billion-ton business</h3>
<p>We may call this the age of information, but we could also call it the age of steel. More than 1.5 billion tons of steel are made each year for bridges, concrete reinforcement, vehicles and building frameworks, among many other purposes.</p>
<div class="box350">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/arch_bridge.jpg" rel="lightbox[29769]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/arch_bridge.jpg" alt="Huge steel arch rises over road with cables connected from top of arch to roadway." title="Huge steel arch rises over road with cables connected from top of arch to roadway." width="100%" height="auto" class="alignnone size-full wp-image-29785" /></a></p>
<div class="attrib">Photo: <a href="http://en.wikipedia.org/wiki/File:Hulme_Arch_Bridge_1.jpg#">Wikimedia Commons</a>
</div>
<div class="caption">The Hulme Arch Bridge, at Hulme, Manchester, England, is a harmonious construction of steel cables and arches.</div>
</div>
<p>Steel is usually about 99 percent iron, and the tight bond between iron and oxygen in iron ore explains much of the environmental cost of making steel. </p>
<p>
  Now MIT professor Donald Sadoway has found a way to sidestep many of these drawbacks with a 1565&deg; C process that uses electricity to separate iron and oxygen.</p>
<h3>A backward battery</h3>
<p>
  Electrolysis is the reverse of a battery. Both batteries and electrolytic cells contain an electrolyte that conducts electricity between two electrodes. In both cases, the process alters the chemistry of the electrolyte, and an electrical current flows.</p>
<p>
  In a battery, chemical energy in the electrolyte is converted to electrical energy. In electrolysis, electrical energy is converted into chemical energy.</p>
<div class="box350left">
<h4>Photos from the electric smelter</h4>
<p><a href="http://whyfiles.org/wp-content/uploads/2013/05/fig1sadoway.jpg" rel="lightbox[29769]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/fig1sadoway.jpg" alt="Top: Coarse crystal texture atop finer texture; bottom: clean, square metal electrode is next to one draped in black gooky material." title="Top: Coarse crystal texture atop finer texture; bottom: clean, square metal electrode is next to one draped in black gooky material." width="100%" height="auto" class="alignnone size-full wp-image-29783" /></a></p>
<div class="attrib">Photo: Donald Sadoway/Nature</div>
<div class="caption"><strong>Top</strong>: On the cathode, chunky, molten iron sits on top of cathode material. <strong>Bottom left:</strong> The chromium-iron anode before use. <strong>Bottom right:</strong> After use, the anode is almost the same size, though it&#8217;s covered with cooled electrolyte made of iron and iron ore. </div>
</div>
<p>
  In iron electrolysis, reduction &#8212; the chemical reaction that allows iron to release oxygen &#8212; occurs at an electrode called the anode. Nearly pure iron pools at the other electrode.</p>
<p>
  In conventional iron smelting, the oxygen reacts with carbon in coke, a carbon fuel, to make carbon dioxide. The molten iron is brittle, due to a high carbon content, so a second step is needed to drive off that carbon.</p>
<p>
  Both processes make carbon dioxide pollution. </p>
<div class="box400">
  <img src="http://whyfiles.org/wp-content/uploads/2013/05/rollover_greensteel1.jpg" class="mouseover" data-oversrc="http://whyfiles.org/wp-content/uploads/2013/05/rollover_greensteel2.jpg" /></p>
<div class="caption">Coke, a fuel used to strip oxygen from iron ore, was made in this English coke oven. Rollover to see air being blown through molten iron to clear carbon leftover from the coke. This Bessemer process is no longer used, but impurities remain a hindrance in steelmaking.</div>
<div class="attrib">Credit 1: <a href="http://www.flickr.com/photos/earthwatcher/177326717/">Earthwatcher</a>, (rollover) 2: Republic Steel, Youngstown, Ohio, <a href="http://en.wikipedia.org/wiki/File:A_scene_in_a_steel_mill,_Republic_Steel,_Youngstown,_Ohio.jpg" rel="lightbox[29769]">Wikimedia Commons</a></div>
</p></div>
<p>
  Because the energy to cut the bond between iron and oxygen &#8212; and much of the electricity used to refine steel &#8212; both originate in coal, the iron and steel sector is &#8220;the second-largest industrial user of energy … and the largest industrial source of CO<SUB>2</SUB> emissions,&#8221; according to the <a href="http://www.iea.org/publications/freepublications/publication/etp2010.pdf">International Energy Agency</a>. </p>
<p>
  By improving efficiency, the new process should cut down on greenhouse gases. However, although because electricity is still needed, the size of the benefit depends on how the current is generated.</p>
<p>
  Still, the process can, judo-style, convert the oxygen in iron ore from a liability into an asset. &#8220;Oxygen bubbles float to the top, and you can collect them,&#8221; says Sadoway. &#8220;You are making, for every ton of iron, two-thirds of a ton of oxygen that&#8217;s industrial quality, marketable.&#8221;</p>
<h3>Amazing anode</h3>
<p>
  The critical advance is an anode made of chromium and iron that can survive a 2850&deg;F, oxygen-rich process &#8212; conditions conducive to a chemical reaction that would obliterate most materials.</p>
<p>
  Instead, a thin film of metal oxide forms on the anode in the intense heat. &#8220;It&#8217;s remarkable,&#8221; says Sadoway. The oxide, he says, &#8220;forms a protective layer that prevents further consumption  of the base metal &#8212; yet at the same time, is not resistive to any great extent.&#8221;</p>
<p>
  That allows an electric current to enter the hot brew of iron oxide.</p>
<p>
Hurdles remain. &#8220;I am not saying anybody will take a wrecking ball to an integrated steel plant,&#8221; Sadoway says. But he thinks an electrolytic smelter could avoid the need for a sinter plant to process iron ore, a coke oven to produce coke, and an oxygen furnace to remove excess carbon left over from the coke.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/steel_rods.jpg" rel="lightbox[29769]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/steel_rods.jpg" alt="Thin silver metal rods grouped together and lying horizontally." title="Thin silver metal rods grouped together and lying horizontally." width="100%" height="auto" class="alignnone size-full wp-image-29782" /></a></p>
<div class="attrib">Photo: <a href="http://www.shutterstock.com/pic-73207399/stock-photo-steel-rods-or-bars-used-to-reinforce-concrete-macro-with-shallow-depth-of-field.html?src=bQjrhiWy4GWh_YAGxWnngw-1-19">Shutterstock</a></div>
<div class="caption">Huge tonnages of steel reinforcing rods are used to strengthen concrete.</div>
</div>
<p>
  Steel plants cost billions of dollars, and must produce a couple of million tons per year to make money, Sadoway says. If the electrolytic process, with its reduced need for fossil fuel and equipment, survives further testing, smaller plant expansions could be possible, he says.</p>
<p>
  Any climate-based restrictions on carbon dioxide pollution will only help the new process become a player in the giant steel industry, Sadoway says. &#8220;We are hoping there will be early adopters,&#8221; he says, &#8220;if the price point is lower and there is an environmental imperative toward clean steelmaking.&#8221;</p>
<div id="writer">
<p>&#8211; David J. Tenenbaum</p>
</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="A new anode material for oxygen evolution in molten oxide electrolysis, Antoine Allanore, Lan Yin &amp; Donald R. Sadoway, Nature, 10 May 2013." id="return-note-29769-1" href="#note-29769-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="Steel: from start to finish" id="return-note-29769-2" href="#note-29769-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Environmental Protection Agency on iron and steel" id="return-note-29769-3" href="#note-29769-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="The story of steel in China" id="return-note-29769-4" href="#note-29769-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Nitty gritty details about how to reduce steel production emissions" id="return-note-29769-5" href="#note-29769-5"><sup>5</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29769-1">A new anode material for oxygen evolution in molten oxide electrolysis, Antoine Allanore, Lan Yin &#038; Donald R. Sadoway, Nature, 10 May 2013. <a href="#return-note-29769-1">&#8617;</a></li><li id="note-29769-2"><a href="http://www.youtube.com/watch?v=9l7JqonyoKA">Steel: from start to finish</a> <a href="#return-note-29769-2">&#8617;</a></li><li id="note-29769-3"><a href="http://www.epa.gov/sectors/sectorinfo/sectorprofiles/steel.html#Performance">Environmental Protection Agency on iron and steel</a> <a href="#return-note-29769-3">&#8617;</a></li><li id="note-29769-4"><a href="http://www.nytimes.com/2012/05/04/business/global/in-chinas-floundering-steel-sector-the-burden-of-politics.html?pagewanted=all">The story of steel in China</a> <a href="#return-note-29769-4">&#8617;</a></li><li id="note-29769-5"><a href="http://www.epa.gov/nsr/ghgdocs/ironsteel.pdf">Nitty gritty details about how to reduce steel production emissions</a> <a href="#return-note-29769-5">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>Exploring a volcano</title>
		<link>http://whyfiles.org/2013/exploring-a-volcano/</link>
		<comments>http://whyfiles.org/2013/exploring-a-volcano/#comments</comments>
		<pubDate>Thu, 02 May 2013 20:28:43 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
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		<description><![CDATA[As molten rock gathers underground, a huge volcanic field in Chile is the fastest-rising land on Earth.  The biggest eruptions at Laguna del Maule, if they happened today, would change our climate and planet. Scientists are racing to understand a strange unrest in a bizarre landscape. <a href="http://whyfiles.org/2013/exploring-a-volcano/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3>One of these days…</h3>
<p>
  A field of volcanoes you have never heard of will wake up, and if it fulfills its geologic potential, the consequences will be heard around the world.</p>
<div class="box400"><a href="http://whyfiles.org/wp-content/uploads/2013/05/laguna_pano.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/laguna_pano.jpg" alt="Calm curving water body surrounded by rocky, gravelly landscape." title="Calm curving water body surrounded by rocky, gravelly landscape." width="400" height="auto" class="alignnone size-full wp-image-29659" /></a></p>
<div class="attrib">The Why Files.</div>
<div class="caption">Placid, beautiful, mysterious: The Laguna del Maule caldera is all of these today. When will it wake up and reveal the molten rock that is driving one of the most active volcanoes on the planet? </div>
</div>
<p>
  Curiously, Laguna del Maule, situated along the spine of the Andes, doesn’t even look like a volcano. No towering peak, no plume of smoke or steam, no stench of sulfur. But 36 times in the past 20,000 years, volcanic vents surrounding the lake basin have created monster fields of lava &#8212; with huge deposits of volcanic glass, pumice and ash. </p>
<p>
  Once, almost a million years ago, this volcano field had an eruption that, if repeated, could change history by affecting air travel, agriculture and climate. Tantalizing scraps of lava indicate enormous eruptions 1.5 million and 336,000 years ago.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/peninsula.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/peninsula.jpg" alt="Long, thin land mass protrudes from water, backdrop is mountainous and tan." title="Long, thin land mass protrudes from water, backdrop is mountainous and tan." width="620" height="auto" class="alignnone size-full wp-image-29677" /></a></p>
<div class="attrib">The Why Files </div>
<div class="caption">This peninsula, formed during a lava flow 24,000 years ago, is near the center of uplift today &#8212; and therefore likely a marker for a growing chamber of magma.</div>
</div>
<p>
  It&#8217;s a maxim of geology: What happened before can happen again. </p>
<p>The volcanic field is 20 kilometers in diameter, and the recent surge in attention is largely due to a widespread, 1.5 meter rise since 2007. &#8220;That&#8217;s phenomenal,&#8221; says Brad Singer, a professor of geoscience at the University of Wisconsin-Madison, who began studying this part of the Andes 20 years ago. &#8220;There  is no other volcano in the world that is going up at this rate.&#8221;</p>
<div class="box400left">
<iframe width="400" height="225" src="http://www.youtube.com/embed/f9goYTZ-unU?rel=0" frameborder="0" allowfullscreen alt="Movie explains the importance of gathering samples to date eruptions."></iframe></p>
<div class="attrib">The Why Files</div>
<div class="caption">Brad Singer explains the role of rock samples in understanding the volcanoes at Laguna del Maule.</div>
</div>
<p>
  Other causes for concern include swarms of earthquakes, horizontal spreading, spreading faults, and new detections of carbon dioxide gas that likely signal the enlargement of the underground magma pool that powers the volcano.</p>
<p>
  Eruptions can be ranked by estimating the volume of volcanic ash (mainly tiny shards of glass) they release. In 1980, Mt. St. Helens released about one cubic kilometer.  In 1991, Pinatubo in the Philippines sent more than 10 cubic kilometers; its ash and sulfur gas injected into the upper atmosphere cooled the planet for two years.</p>
<p>
  About 950,000 years ago, an eruption at Laguna del Maule spewed dozens of cubic kilometers &#8212; perhaps more than 100. The eruption blanketed Argentina, downwind, with ash.</p>
<div class="imgBigClear">
<img src="http://whyfiles.org/wp-content/uploads/2013/05/rollover_lava1.jpg" class="mouseover" data-oversrc="http://whyfiles.org/wp-content/uploads/2013/05/rollover_lava2.jpg" /></p>
<div class="attrib">Based on data from Geological Society of London, 2005 and Gunder and Mahood, 1988. Graphs by The Why Files</div>
<div class="caption">The bigger the eruption, the less common it is. Laguna del Maule could go back to sleep, or <strong>(rollover)</strong> enter the history books as the largest eruption in recorded history.</div>
</div>
<h3>Past is prologue</h3>
<p>
  A 100 cubic-kilometer eruption could cause global cooling, and intense damage to agriculture could affect the entire globe.</p>
<p>
  Because the only  people around Laguna del Maule  are the horsemen who drive cattle in the summer, the immediate human impacts will be limited &#8212; unless giant flows of hot rock or debris reach Chilean cities.  But dense ash-fall during the growing season could devastate agriculture in Argentina, to the east.</p>
<p>
  Just 50 kilometers north of Laguna del Maule, a similar volcanic field, called Calabozos, has had three super-eruptions in the past million years, spewing about 1,000 cubic kilometers of ash in total.</p>
<p>
  Those eruptions rank among the largest in a million years.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/chile_volcano_map.jpg" rel="lightbox[29639]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/chile_volcano_map.jpg" alt="map of Satellite image of Chile with a zoomed portion show site of Laguna del Maule." title="map of Satellite image of Chile with a zoomed portion show site of Laguna del Maule." width="620" height="auto" class="alignnone size-full wp-image-29699" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">Laguna del Maule, a massive volcanic complex in Chile, could change the planet, with an eruption like three giants at nearby Calabozos. Maule could be returning to life. How dangerous is that?</div>
</div>
<p>
  The immediate cause  of concern at Laguna del Maule comes from radar satellites and the global positioning system, which show that 1.5-meter rise in six years. The accelerating uplift is almost certainly due to new magma entering a pool located five kilometers underground.</p>
<div class="box400left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/volc_diagram.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/volc_diagram.jpg" alt="cross-section of earth showing ocean tectonic plate sliding beneath continental plate, with eruptions further inland." title="cross-section of earth showing ocean tectonic plate sliding beneath continental plate, with eruptions further inland." width="398" height="auto" class="alignnone size-full wp-image-29701" /></a></p>
<div class="attrib"><a href="http://www.shutterstock.com/pic-101739382/stock-vector-plate-subduction-diagram.html?src=csl_recent_image-1">Volcano diagram</a> from Shutterstock</div>
<div class="caption">Volcanoes are fed by molten rock, or magma, located deep underground. A weak spot in the crust allows magma to reach the surface, where the rocky products are called lava. In places like Laguna del Maule, silica-rich lava holds vast amounts of water. When pressure drops, this water flashes to steam; the rapid expansion of volume drives explosive eruptions.</div>
</div>
<p>
  In 2013, with support from the National Science Foundation, UW-Madison geoscientists began a field campaign to gather more basic data on Laguna del Maule.</p>
<p>
  &#8220;Our aim is to try to figure out if magma is actively intruding in the crust below the volcanic field,&#8221; says Singer, who worked at the site with U.S. Geological Survey expert Wes Hildreth, who started the first systematic mapping of the area in the 1980s. &#8220;We hypothesize that this is what is inflating the crust,” Singer says. “It&#8217;s like a balloon blowing up the surface.&#8221; </p>
<p>
  History, says Singer, is usually a good guide to the future. Laguna del Maule has &#8220;had at least three million years of pretty constant igneous [molten-rock] activity, and about every half million years it looks like a fairly substantial, caldera-forming eruption. Are we overdue for another?&#8221; </p>
<p>
  A caldera is a ring-shaped structure formed when by collapse when a giant pool of magma is vented to the surface.</p>
<div class="blockquote">
<h3>Stupendous super-eruptions</h3>
<p>Humans have seen the aftermath of super-eruptions, but never the eruption itself, which may disgorge a million tons of rock every second. If the past is a reliable guide, super-eruptions can change the planet.</p>
<div class="box280">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/toba1.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/toba1.jpg" alt="Terraced fields drop down to a lake surrounded by mountains." title="Terraced fields drop down to a lake surrounded by mountains." width="100%" height="auto" class="alignnone size-full wp-image-29712" /></a></p>
<div class="attrib">Photo: <a href="http://www.flickr.com/photos/elbisreverri/39452447/">elbisreverri</a></div>
<div class="caption">The caldera at Lake Toba, in Sumatra, Indonesia, formed during a stupendous super-eruption about 70,000 years ago. In its last eruption (so far!) the volcano released about 2,800 cubic kilometers of lava and ash!</div>
</div>
<p>
  The effects of &#8220;Rare but extremely large explosive supereruptions …will be felt globally or at least by a whole hemisphere,&#8221; wrote two scientists in 2008<a class="simple-footnote" title="Consequences of Explosive Supereruptions, Stephen Self and Stephen Blake, Elements, Vol. 4, 41–46" id="return-note-29639-1" href="#note-29639-1"><sup>1</sup></a>. The most widespread effects are likely to derive from the volcanic gases released, particularly sulfur gases that are converted into sulfuric acid aerosols in the stratosphere. These will remain for several years, promoting changes in atmospheric circulation and causing surface temperatures to fall dramatically in many regions, bringing about temporary reductions in light levels and producing severe and unseasonable weather (‘volcanic winter’). Major disruptions to global societal infrastructure can be expected for periods of months to years.&#8221;</p>
</div>
<h3>The questions we ask </h3>
<p>
  &#8220;Volcano&#8221; and &#8220;prediction&#8221; are not words that geologists like to join together, but the essential goal at Laguna del Maule is to understand the situation well enough to answer a simple question: How likely is an eruption that would be large enough to affect the region or the planet? </p>
<p>
  How much do we need to worry? </p>
<p>
  Singer hopes that the 2013 exploration of Laguna del Maule will soon be augmented with a wider variety of analytic techniques: </p>
<div class="bullets">
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Dating techniques</strong> can tell when magma cooled at the surface, revealing the &#8220;pulse&#8221; of eruptions. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Mineral analysis</strong> can assess the physical conditions before previous eruptions, and suggest how changes in the magma trigger eruptions. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Seismology</strong> uses earthquakes and explosions to define the shape of underground structures.  </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Gas measurements</strong> offer clues about the type and volume of magma under the volcanic field. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Electrical and magnetic measurements</strong> outline the shape of a magma chamber. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Gravity meters</strong> can detect changes in the volume of magma at depth. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" /><strong>Eyeballs</strong>, a venerable tool of geology, can see faults, uplift and lava from past eruptions.  </p>
</div>
<p>
  These techniques gain precision if their data are merged, Singer says. Many methods &#8220;can give a fuzzy picture of what&#8217;s down there, but the more techniques you can bring to bear, the more you can tighten up the boundaries between different materials” and so get a better picture of the magma and its potential routes to the surface. </p>
<div class="box300left">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/examin_rock.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/examin_rock.jpg" alt="Man holding camera touches black, glassy rock in younger woman’s hand; a man looks on." title="Man holding camera touches black, glassy rock in younger woman’s hand; a man looks on." width="100%" height="auto" class="alignnone size-full wp-image-29715" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">Brad Singer (left) advises UW-Madison graduate students Nathan Andersen and Erin Birsic, as they hunt for rocks of a certain age for Birsic&#8217;s master&#8217;s thesis. She is focusing on remnants of a massive eruption from 950,000 years ago, but after millennia of erosion those rocks are scarce.</div>
</p></div>
<h3>Need a date?</h3>
<p>
  If you need a date, Singer is a good guy to know, at least if you want to date rocks. A specialist in geochronology, Singer uses sensitive instruments to squeeze out a date of formation for igneous rock, meaning when the rock solidified from cooling magma.</p>
<p>
  The overall goal at Maule is to tease out the timing of the many lava flows in the basin.</p>
<p>
  One dating technique relies on the radioactive decay of potassium into the gas argon, which follows a schedule set by the half-life of the isotope potassium-40. </p>
<p>
  Magma is hot, and any argon present will diffuse into the crust, but argon is trapped after magma cools into lava at earth&#8217;s surface. &#8220;Once it cools past a certain point, then argon stops diffusing, allowing argon produced from radioactive decay to build up,&#8221; says Nathan Andersen, a Ph.D. student in geoscience at Wisconsin who is dating recent lava flows at Maule. </p>
<p>
  Potassium-40 decays into argon-40, and so counting each isotope becomes the foundation for calculating the date of cooling.</p>
<p>
  However, potassium decays slowly, and this system has yet to date recent flows at Laguna del Maule, which are apparently younger than 2,000 years.</p>
<h3>The eyeball on the highball</h3>
<p>
  High-tech is eye-catching, but once you know what you are looking for, eyesight offers insight. Look at the large granite intrusions underneath Tatara San Pedro, a nearby volcano. The granite is apparently the remains of a magma chamber which cooled about 6 million years ago.</p>
<p>
  &#8220;It looks like a frozen magma body that is analogous to the magma body we think is active beneath Laguna del Maule today,&#8221; Singer says. Similar bodies of frozen magma have risen over 80 million years in California&#8217;s Sierra Nevadas. &#8220;But here, it&#8217;s now 2,500 meters above sea level. That&#8217;s 7,500 meters of uplift in 6 million years!&#8221;</p>
<p>
  The express elevator that is raising Laguna del Maule can be seen with the naked eye. White streaks on certain parts of the shoreline contain diatoms and ash that were deposited in the lake. &#8220;These are a sign that the uplift has been going on for many centuries,&#8221; Singer says.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/laguna_shoreline2.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/laguna_shoreline2.jpg" alt="Low mountain reflects in a glassy lake, with natural line visible across the slope." title="Low mountain reflects in a glassy lake, with natural line visible across the slope." width="100%" height="auto" class="alignnone size-full wp-image-29717" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">Laguna del Maule was much larger 19,000 years ago; then the lake level dropped after a lava dam broke. Black arrows show traces of the old shoreline; blue arrows show a landslide that occurred since the sudden drop in lake level.</div>
</div>
<p>
  The lake bench, 200 meters above the existing lake, shows an old shoreline that, when formed, was as horizontal as the lake itself. Singer suspects that the profile of the bench carries a long-term record of uplift.</p>
<p>
  Faults, which show how adjacent sections of rock have moved against each other, are another eye-catcher. Last year, the Wisconsin scientists found new evidence of horizontal spreading and faults; these structures show earth movement, and could facilitate the rise of magma and an eruption.</p>
<h3>Thou shalt know thy rocks</h3>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/p1000445.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/p1000445.jpg" alt="Laguna del Maule landscape." title="Laguna del Maule landscape." width="100%" height="auto" class="alignnone size-full wp-image-29719" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">The Laguna del Maule landscape is steadily changing. The white scrap of cooled magma (foreground) is the eroded remains of a massive lava flow. The rock originated as a pyroclastic flow; a fast-moving, red-hot material that cooled after being deposited, probably about 19,000 years ago.</div>
</div>
<p>
If you know what you are looking at, small outcrops can play a large  role in understanding the geologic history at Laguna del Maule. Analysis of the chemistry, minerals and texture of rocks can show that remote outcrops are remnants from a single eruption, or a single magma body. &#8220;When you start to see rhyolite on one side of the lake,&#8221; Singer adds, &#8220;and identical rhyolite on the other side, and you try to imagine how big the system must have been to produce both of those eruptions, that really grabs your attention.&#8221; </p>
<p>
  (Rhyolite, an uncommon type of magma that is rich in water and silica, and resistant to flow, is the most explosive and dangerous magma on the planet.) </p>
<p>
  Finding chemically similar lava over such a large area indicates that a large eruption is possible in the future.</p>
<h3>Measuring the ground shaking</h3>
<p>
  When the earth moves, the resulting vibrations convey clues about the planet&#8217;s internal structure. Both earthquakes and deliberate explosions can produce a &#8220;CAT scan of the crust,&#8221; based on how waves are transmitted, reflected, absorbed or converted into different waves, says Clifford Thurber, a seismologist at UW-Madison.</p>
<div class="bullets">
<p><strong>Earthquakes radiate P and S waves:</strong></p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" />P, or &#8220;primary,&#8221; waves resemble sound waves, with zones of compression and decompression. </p>
<p>
<img src="http://whyfiles.org/wp-content/uploads/2013/05/bullet_volcano.png" alt="" width="60" height="20" class="alignnone size-full wp-image-29740" />S, or &#8220;secondary,&#8221; waves, are a bit slower, and travel rather like a slithering snake. </p>
</div>
<p>
  In the first months of this year, seismographs at Laguna del Maule were &#8220;detecting repeated swarms of earthquakes, clusters that happen close together in time and space,&#8221; Thurber says. &#8220;Those are hallmarks of magmatically active volcanic systems, but they do not prove anything. On the other hand, if it were seismically silent, one would have to wonder if anything is going on.&#8221; </p>
<div class="box400">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/p1000287.jpg" rel="lightbox[29639]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/05/p1000287.jpg" alt="Building surrounded by fence has large crack in upper façade." title="Building surrounded by fence has large crack in upper façade." width="100%" height="auto" class="alignnone size-full wp-image-29726" /></a></p>
<div class="attrib">2013 photo, The Why Files</div>
<div class="caption">This building in Talca, Chile, was destroyed by the magnitude 8.8 <a href="http://en.wikipedia.org/wiki/2010_Chile_earthquake">Maule earthquake</a> in 2010. This, the sixth-largest quake ever measured, killed 525 people.</div>
</div>
<p>
  After a swarm of earthquakes in March, 2013, scientists at the Chile’s Southern Andes volcano observatory issued a yellow alert, indicating that an eruption was possible in weeks or months. </p>
<p>
  Stronger and longer earthquake swarms and tremors are danger signs, Thurber says.  &#8220;If we get sustained tremor, a low-level shaking that continues for hours to days, then we would get nervous. If we start to get very large earthquakes, 6 magnitude, it&#8217;s time to go.&#8221; </p>
<p>
  Thurber is introducing state-of-the-art computer analysis of seismic waves that will pinpoint arrival times more precisely. With improved earthquake locations, &#8220;We can do a better job of clarifying the structures that produce the earthquake,&#8221; Thurber says.  </p>
<p>
  With a seismic expert on the line, we had to ask why the giant 2010 Maule earthquake did not trigger an eruption at nearby Laguna del Maule, just a few hundred kilometers the east of the epicenter.  &#8220;It&#8217;s odd,&#8221; says Thurber. &#8220;This happens around the world. Sometimes  a large earthquake triggers activity, and sometimes it does not. The volcano has to be ready.&#8221; </p>
<div class="box400left">
<iframe width="400" height="225" src="http://www.youtube.com/embed/1d-SDjhoHfo?rel=0" frameborder="0" allowfullscreen></iframe></p>
<div class="attrib">The Why Files </div>
<div class="caption">Glyn Williams-Jones explains the significance of carbon dioxide measurements at Laguna del Maule.</div>
</div>
<h3>Gas attack!</h3>
<p>
  Volcanoes can release staggering amounts of gas: Mt. Pinatubo coughed up  an estimated 20 million tons of  sulfur dioxide. </p>
<p>
  Carbon dioxide, a hallmark of basalt, is the big concern at Laguna del Maule, and<br />
despite difficulties with two brand-new carbon dioxide meters, Glyn Williams-Jones, a volcanologist at Simon Fraser University in British Columbia, did find some elevated levels along the lakeshore in 2013.</p>
<p>&#8220;That means there is basalt entering the magma chamber from below,&#8221; says Williams-Jones. </p>
<p>
  Newly arrived, extremely hot basalt could interact with the existing rhyolite magma and boost the odds of eruption.  </p>
<div class="box300">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/gravity_box.jpg" rel="lightbox[29639]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/gravity_box.jpg" alt="Woman bends over boxy white device with one eye hovering over eyepiece and other eye closed." title="Woman bends over boxy white device with one eye hovering over eyepiece and other eye closed." width="100%" height="auto" class="alignnone size-full wp-image-29730" /></a></p>
<div class="attrib">The Why Files</div>
<div class="caption">Helene Le Mevel, a graduate student, adjusts a meter that measures the local gravity field with astonishing precision. If significant amounts of magma are rising underground, gravity should be weaker in next year&#8217;s measurements &#8212; if the measurements are precise and accounts for the ongoing uplift of the area.</div>
</div>
<h3>Electrical currents</h3>
<p>
  To get a better sense of what&#8217;s happening under ground, geophysicists can measure electrical currents and magnetic fields inside Earth. &#8220;The surface is bathed by electromagnetic radiation from the sun, and there is an electrical response at depth,&#8221; says Singer. </p>
<p>
  The technique, called magnetotellurics, is used in geothermal energy exploration, and an energy company has already used it to find a shallow steam field just west of the caldera that could power a geothermal electric generator. </p>
<p>
  Magnetotellurics has already revealed that the crust around Laguna del Maule is about 40 kilometers thick, and that the magma body is about 5 kilometers below ground, Singer says. In the future, the technique could help define the size and location of melted crust near the magma chamber. </p>
<h3>Gravely measuring gravity</h3>
<p>
  Accurate measurements of  gravity are another telltale about changes in the hot, molten magma. Because matter expands as it warms, magma is 10 percent less dense than surrounding rock, explains Basil Tikoff, a UW-Madison specialist in large-scale structure of the Earth, such as faults, old mountain belts and tectonic plates. </p>
<p>
  Gravity &#8220;does not have the resolution of other techniques, and it requires an enormous amount of fieldwork,&#8221; Tikoff says. &#8220;It&#8217;s a kind of geophysics that very few geophysicists do now.&#8221;  </p>
<div class="box400left">
<iframe width="400" height="225" src="http://www.youtube.com/embed/xtmAKoKECCk?rel=0" frameborder="0" allowfullscreen alt="Movie shows scientists traveling by boat and setting up a gravity-measurement station."></iframe></p>
<div class="attrib">The Why Files</div>
<div class="caption">Basil Tikoff of UW-Madison explains the role of the gravity meter.</div>
</div>
<p> In March, Tikoff, graduate student Helene Le Mevel, and Williams-Jones installed 38 gravity stations on two lines crossing the center of uplift. The gravimeters are built around an ultra-precise spring that allows a suspended weight to respond to gravity. Although the meters are more than one-h century old, they are accurate to one part in 100 million. &#8220;If there is an earthquake, we have to turn the gravimeter off and wait,&#8221; says Tikoff. &#8220;If the land is going up and down, the gravimeter can see that, even if we can&#8217;t feel it.&#8221;  </p>
<p>
  The pull of gravity decreases as  the instrument gets farther from the center of the Earth. &#8220;This instrument is so sensitive that if we went up a few stairs, you could tell,&#8221; Tikoff says. Therefore, Laguna del Maule&#8217;s pervasive uplift must be mathematically removed from subsequent measurements.  </p>
<p>
  Baseline measurements taken in March and April will serve as reference points for subsequent surveys early in 2014. Located at the crest of the Andes, Laguna del Maule will be impassable until then due to its astonishing snowfall. </p>
<h3>What comes next?</h3>
<p>
  Laguna del Maule is a contradiction. To people who would be affected by a large eruption (which could include all of humanity in a super-eruption) it&#8217;s a threat. </p>
<p>
  But to geologists, it&#8217;s an opportunity to see how Earth is changing, and that is what draws Singer back. &#8220;The processes of deep Earth history are abstract,&#8221; Singer says. &#8220;I am more attracted to things that happen to the planet on a rapid time scale, such as glaciers and volcanoes. These take place on a human time scale.&#8221; </p>
<div class="box400">
<a href="http://whyfiles.org/wp-content/uploads/2013/05/gravimeter.jpg" rel="lightbox[29639]"><img src="http://whyfiles.org/wp-content/uploads/2013/05/gravimeter.jpg" alt="Three people on a tan beach with dark black rocks using tall yellow instrument, lake and mountains in background." title="Three people on a tan beach with dark black rocks using tall yellow instrument, lake and mountains in background." width="100%" height="auto" class="alignnone size-full wp-image-29733" /></a></p>
<div class="attrib">March, 2013, The Why Files</div>
<div class="caption">Gravimeters must be protected from vibration due to wind. Graduate student Tor Stetson-Lee blocks wind as Basil Tikoff measures gravity on the east shore of Laguna del Maule. That flying-saucer-on-a-stick is a GPS receiver able to measure altitude in millimeters.</div>
</div>
<p>
  The explanation for the new activity is pretty clear, Singer says. &#8220;There is no reason other than new magma to explain uplift of that size.&#8221; </p>
<p>
  The rapid uplift, combined with swarms of small earthquakes, apparent releases of carbon dioxide, and spreading of faults cannot go on forever. If they continue, the magma&#8217;s upward pressure will eventually exceed Earth&#8217;s ability to contain it. </p>
<p>
  Then Laguna del Maule erupts. </p>
<p>
  Until then, geoscientists see a chance to observe in real-time processes whose results can be seen all over the planet, and there is lots to be learned before the eruption, says Singer, who normally looks, forensic-style, after the eruption. &#8220;I try to reconstruct the history of magmas that feed the volcano, and how the processes inside the magma affect the way the volcano erupts, whether it&#8217;s explosive or passive. I try to stay away from them when they are erupting.&#8221; </p>
<p>
  Volcanoes usually emit a sequence of warnings, including a critical change in seismic signals, but nobody knows if Laguna del Maule will break the mold or follow it, adds Thurber, the seismologist. &#8220;We don’t have perspective. Studies that have been done on systems like this have exclusively been done after they have blown their top.&#8221; </p>
<p>
  Volcanoes are inherently unpredictable, especially the bizarre giants like Laguna del Maule, Thurber says. &#8220;We have no idea what the timeframe is to go from the rapid inflation we see now to an eruption. It could stop inflating and say &#8216;I&#8217;m done for now.&#8217; It&#8217;s completely unpredictable; it could erupt tomorrow, next week, next year, next decade, next century. We don’t know for sure it is going to blow, but it sure as heck looks like it. If it erupts, the fact that a study had been done beforehand would be phenomenal, and unique in the world.&#8221; </p>
<div id="writer">
<p>&#8211; David J. Tenenbaum </p>
</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="Supervolcanoes and their explosive supereruptions, Calvin F. Miller and David A. Wark, Elements, Vol. 4, pp 11–16." id="return-note-29639-2" href="#note-29639-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Explore the United States volcanoes" id="return-note-29639-3" href="#note-29639-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="Oregon State University’s everything-you-want-to-know resource: Volcano World" id="return-note-29639-4" href="#note-29639-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Keep an eye on volcanic activity in Hawaii" id="return-note-29639-5" href="#note-29639-5"><sup>5</sup></a><br />
<a class="simple-footnote" title="National Geographic’s Volcanoes 101" id="return-note-29639-6" href="#note-29639-6"><sup>6</sup></a><br />
<a class="simple-footnote" title="Laguna del Maule pops up on Wired’s science blog, Eruptions" id="return-note-29639-7" href="#note-29639-7"><sup>7</sup></a><br />
<a class="simple-footnote" title="A Mexican volcano is waking up, too!" id="return-note-29639-8" href="#note-29639-8"><sup>8</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29639-1">Consequences of Explosive Supereruptions, Stephen Self and Stephen Blake, Elements, Vol. 4, 41–46 <a href="#return-note-29639-1">&#8617;</a></li><li id="note-29639-2">Supervolcanoes and their explosive supereruptions, Calvin F. Miller and David A. Wark, Elements, Vol. 4, pp 11–16. <a href="#return-note-29639-2">&#8617;</a></li><li id="note-29639-3"><a href="http://volcanoes.usgs.gov/">Explore the United States volcanoes</a> <a href="#return-note-29639-3">&#8617;</a></li><li id="note-29639-4">Oregon State University’s everything-you-want-to-know resource: <a href="http://volcano.oregonstate.edu/">Volcano World</a> <a href="#return-note-29639-4">&#8617;</a></li><li id="note-29639-5">Keep an eye on <a href="http://hvo.wr.usgs.gov/">volcanic activity in Hawaii</a> <a href="#return-note-29639-5">&#8617;</a></li><li id="note-29639-6">National Geographic’s <a href="http://video.nationalgeographic.com/video/environment/environment-natural-disasters/volcanoes/volcanoes-101/">Volcanoes 101</a> <a href="#return-note-29639-6">&#8617;</a></li><li id="note-29639-7">Laguna del Maule pops up on <a href="http://www.wired.com/wiredscience/2013/04/rumbling-chilean-volcanoes-lascar-laguna-del-maule-copahue-antuco/">Wired’s science blog, Eruptions</a> <a href="#return-note-29639-7">&#8617;</a></li><li id="note-29639-8"><a href="http://www.washingtonpost.com/world/the_americas/mexican-earthquake-awakes-volcano/2013/04/14/8ec10c63-4cb9-4fbb-9e6d-ea917d70f859_video.html">A Mexican volcano is waking up, too!</a> <a href="#return-note-29639-8">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>Monkey: When in Rome…</title>
		<link>http://whyfiles.org/2013/monkey-when-in-rome/</link>
		<comments>http://whyfiles.org/2013/monkey-when-in-rome/#comments</comments>
		<pubDate>Thu, 25 Apr 2013 20:05:41 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
				<category><![CDATA[All]]></category>
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		<guid isPermaLink="false">http://whyfiles.org/?p=29563</guid>
		<description><![CDATA[If you teach a group of monkeys that blue corn tastes yucky, they switch to pink corn. What happens when a monkey raised to detest pink corn enters the group? You might be surprised! <a href="http://whyfiles.org/2013/monkey-when-in-rome/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3>Study: Monkeys ape the behavior of their group</h3>
<div class="box150left">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal9.jpg" rel="lightbox[29563]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal9.jpg" alt="Vervet jumping from one green, leafy branch to another with tail outstretched and blue sky background." title="Vervet jumping from one green, leafy branch to another with tail outstretched and blue sky background." width="150" height="auto class="alignnone size-full wp-image-29596" /></a></p>
<div class="attrib">Image ©Erica van de Waal</div>
<div class="caption">A young vervet monkey jumps between limbs. The food preferences of vervet monkeys can be transmitted to members who join their groups.</div>
</div>
<p>
  A field experiment in South Africa finds that vervet monkeys change their taste in food when they join a new group, providing further evidence for &#8220;social learning&#8221; in animals. When the experiment started, monkeys were fed blue or pink corn. One color had the usual taste, but the other was politely described as &#8220;highly distasteful.&#8221;</p>
<p>That quickly taught the monkeys a lesson on palatability.</p>
<div class="box300">
 <a href="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal6hr.jpg" rel="lightbox[29563]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal6hr.jpg" alt="Seven light grey vervets huddle around two plastic boxes on ground, eating only from the box on the left." title="Seven light grey vervets huddle around two plastic boxes on ground, eating only from the box on the left." width="300" height="auto" class="alignnone size-full wp-image-29581" /></a></p>
<div class="attrib">Image © Erica van de Waal</div>
<div class="caption">Monkeys in this group prefer corn that&#8217;s dyed pink.</div>
</div>
<p>
  The researchers came back four months later to observe what newborns were eating. No shocker: they followed mom&#8217;s advice regarding corn color, even though both colors now tasted the same.</p>
<p>
  Then came the interesting part. As vervet guys mature, they migrate and join new groups. Intriguingly, 10 of the 15 migrant males immediately changed their preference to match the culture of the new group; four others had to wait to switch until the dominant males had eaten their fill.</p>
<p>
  &#8220;We designed the study for infants, which is why we had the four-month gap, so the babies would be ready for solid foods,&#8221; says first author Erica van de Waal, a post-doctoral researcher at St. Andrews University in Scotland. &#8220;But when we followed the male migrations, Wow! This monkey was trained to eat pink corn, and… to see him join the new group who all eat blue, and he decides, &#8216;No, I have to eat blue.&#8217;&#8221; </p>
<p>
  (Tactical note: The researchers tested both combinations. For half the groups, pink started out as yucky, for the other half, blue started out tough on the tongue.) </p>
<div class="box350left">
<video id='8500e375' class='sublime' width='350' height='256' poster='http://whyfiles.org/wp-content/uploads/2013/04/monkey_video_still.png' preload='none' data-uid='8500e375' >
	<source src='http://whyfiles.org/wp-content/uploads/2013/04/vandewaaletal_cellular.m4v' />
	<source src='http://whyfiles.org/wp-content/uploads/2013/04/vandewaaletal_cellular.m4v' />
</video>
</p>
<div class="attrib">Video © Erica van de Waal</div>
<div class="caption">Vervet monkeys from this group were trained to eat pink corn even though both colors were equally palatable. What&#8217;s with the &#8220;eat-and-run&#8221; activity? Those are young monkeys, apparently a bit fearful of the adults who are dominating the food trough.</div>
</div>
<h3>Mother knows best </h3>
<p>
  Following the local lead has obvious evolutionary benefits, says van de Waal. &#8220;In a foraging diet, it&#8217;s really important&#8221; to benefit from the local knowledge.</p>
<p>
  Because females stay home on the range, they have enough local knowledge to survive. Not so for the moving man, van de Waal says. &#8220;He may see a new species of tree, or the toxic composition of edible fruits will change. They need the best local information to survive in the new environment.&#8221;</p>
<p>
That&#8217;s especially true because males make multiple migrations, and thus seldom become experts in the local restaurant scene.  &#8220;You could think that a dominant male that was in a group for 10 years would have as much knowledge as the females, but these males change groups a lot,&#8221; van de Waal says.</p>
<p>
  Although both colors had the same taste in the new location, even after migrant males tasted their previous preference, van de Waal says, &#8220;They still thought, &#8216;If the locals want that one, it must  be better.&#8217;</p>
<p>
  &#8220;We know that vervet monkeys are opportunistic and adaptable, they have spread across Africa, so as soon as they found that both foods taste the same, we thought the ratio would drop to 50-50,&#8221; van de Waal says. &#8220;Not at all. Even the ones with previous knowledge adopted the new normal color.&#8221;</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/durian_shake_montage.jpg" rel="lightbox[29563]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/durian_shake_montage.jpg" alt="Spiky green whole fruit with sliced version resting in front, showing a soft yellow inside with a row of images showing below the fruit, showing three people sitting in restaurant, faces animated with surprise, tasting a milkshake." title="Spiky green whole fruit with sliced version resting in front, showing a soft yellow inside with a row of images showing below the fruit, showing three people sitting in restaurant, faces animated with surprise, tasting a milkshake." width="620" height="auto" class="alignnone size-full wp-image-29584" /></a></p>
<div class="attrib"><a href="http://www.shutterstock.com/pic-57078988/stock-photo-close-up-of-peeled-durian-isolated-on-white-background.html">Durian fruit</a> from Shutterstock and <a href="http://www.flickr.com/photos/sifu_renka/8671088180/">people eating durian</a> from Renée S. Suen</div>
<div class="caption">The durian is a cultural icon in much of Asia and a rite of passage for people trying to accustom themselves to a new culture.  See reactions to taste-testing a durian milkshake above.</div>
</div>
<h3>Shocker: This guy didn’t want advice</h3>
<p>
  What about that 15th male, who remained his allegiance to the corn color of his youth? &#8220;It&#8217;s  kind of strange,&#8221; says van de Waal. &#8220;He entered a group where the dominant male had disappeared, he was a big, strong adult male, a full adult, and he directly became the dominant male, and did not seem to care about what the others were eating.&#8221;</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal1.jpg" rel="lightbox[29563]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/vandewaal1.jpg" alt="Three young and one mature vervets eat pink corn from a plastic box on ground." title="Three young and one mature vervets eat pink corn from a plastic box on ground." width="620 height="auto" class="alignnone size-full wp-image-29594" /></a></p>
<div class="attrib">Image ©Erica van de Waal</div>
<div class="caption">This adult male is eating pink corn with juveniles from his group.</div>
</div>
<p>And that suggests that the survival advantages of changing food preferences to suit the &#8220;culture&#8221; in a new location may not fully explain the results, van de Waal says. &#8220;Maybe it confirms there is something social going on.&#8221;</p>
<p>
  At any rate, you can&#8217;t fool the true experts, she says. &#8220;The females did not try the color he was eating. The dominant females are always conservative; he did not influence the dynamic of the group.&#8221;</p>
<p>
  On the other hand, &#8220;This is sample of one,&#8221; says van de Waal. &#8220;Maybe he is just a stupid male that does not care what the others are doing.&#8221; </p>
<div id="writer">
<p>&#8211; David J. Tenenbaum</p>
</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="Potent Social Learning and Conformity Shape a Wild Primate’s Foraging Decisions, by E. van de Waal et al, Science, 26 April 2013." id="return-note-29563-1" href="#note-29563-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="Monkey facts: learn more about vervets" id="return-note-29563-2" href="#note-29563-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="More monkey socialization: BBC documents vervet consumption of alcohol" id="return-note-29563-3" href="#note-29563-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="How smelly is durian?" id="return-note-29563-4" href="#note-29563-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="Vervet monkey genomics" id="return-note-29563-5" href="#note-29563-5"><sup>5</sup></a><br />
[</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29563-1">Potent Social Learning and Conformity Shape a Wild Primate’s Foraging Decisions, by E. van de Waal et al, Science, 26 April 2013. <a href="#return-note-29563-1">&#8617;</a></li><li id="note-29563-2">Monkey facts: <a href="http://www.awf.org/wildlife-conservation/vervet-monkey">learn more about vervets</a> <a href="#return-note-29563-2">&#8617;</a></li><li id="note-29563-3">More monkey socialization: <a href="">BBC documents vervet consumption of alcohol</a> <a href="#return-note-29563-3">&#8617;</a></li><li id="note-29563-4"><a href="http://www.youtube.com/watch?v=oQj-hFfmYkQ">How smelly is durian?</a> <a href="#return-note-29563-4">&#8617;</a></li><li id="note-29563-5"><a href="http://genomequebec.mcgill.ca/compgen/submit_db/vervet_web/index2">Vervet monkey genomics</a> <a href="#return-note-29563-5">&#8617;</a></li></ol></div>]]></content:encoded>
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		<title>Stem cell therapy: When will it help the heart?</title>
		<link>http://whyfiles.org/2013/stem-cell-therapy-when-will-it-help-the-heart/</link>
		<comments>http://whyfiles.org/2013/stem-cell-therapy-when-will-it-help-the-heart/#comments</comments>
		<pubDate>Fri, 19 Apr 2013 02:27:04 +0000</pubDate>
		<dc:creator>svmedaristwf</dc:creator>
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		<guid isPermaLink="false">http://whyfiles.org/?p=29462</guid>
		<description><![CDATA[Heart muscle is never replaced if it dies in a heart attack. Muscle cells grown from stem cells can briefly help broken hearts.  Could new approaches  make the healing long-term? <a href="http://whyfiles.org/2013/stem-cell-therapy-when-will-it-help-the-heart/">More <span class="meta-nav">&#187;</span></a>]]></description>
				<content:encoded><![CDATA[<h3>Stem cells: When will they heal the heart?</h3>
<p>
  It&#8217;s been 15 years since a University of Wisconsin-Madison researcher isolated embryonic stem cells &#8212; the do-anything cells that appear in early development. It&#8217;s been six years since adult human cells were transformed into the related induced pluripotent stem cells.</p>
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<a href="http://whyfiles.org/wp-content/uploads/2013/04/heart_transplant.jpg" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/heart_transplant.jpg" alt="Two latex gloved hands hold a human heart while other gloved hands hover nearby, ready to begin attaching the heart to a new body." title="Two latex gloved hands hold a human heart while other gloved hands hover nearby, ready to begin attaching the heart to a new body." width="300px" height="auto" class="alignnone size-full wp-image-29469" /></a></p>
<div class="attrib">2001 photo, <a href="http:whyfiles.org">The Why Files</a></div>
<div class="caption">Some day, stem cell therapy could restore cells, save hearts, and avoid the need for some heart transplants, such as this one. This heart is ready for its new home.</div>
</div>
<p>
  And yet the early hope to grow &#8220;spare parts&#8221; &#8212; turning stem cells into specialized cells for repairing a failing brain, pancreas or heart, remains mostly promise rather than reality. </p>
<p>
Researchers have since found how to transform stem cells into a wide variety of body cells, including heart muscle cells, or cardiomyocytes. But the holy Grail &#8212; tissue supplementation or replacement &#8212; remains tantalizingly out of reach.</p>
<p>
  Last week, Why Files attended a symposium on treating cardiovascular disease with stem cells, at the <a href="http://www.btci.org/stemcell/default.html">BioPharmaceutical Technology Center Institute</a> near Madison, Wis. We found the picture unexpectedly complicated: as multiple kinds of stem cells are grown and delivered in a bewildering variety of ways to treat a catalog of conditions.</p>
<p>
  So far, stem cells have not been approved to treat any heart disease  in the United States.</p>
<p>
  Still, the need remains clear. Disorders of the heart and blood vessels, which deliver oxygen and nutrients to the body, continue to kill. &#8220;Today, one of every 2.6 Americans will die of some cause related to their heart,&#8221; writes <a href="http://www.cumc.columbia.edu/dept/cardiology/State_of_Heart.pdf">Columbia University Medical Center</a>.</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/cause_of_death_graph.png" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/cause_of_death_graph.png" alt="More than 600,000 deaths attributed to cardiovascular disease (heart disease + stroke), second is cancer, with 574,000 deaths." title="More than 600,000 deaths attributed to cardiovascular disease (heart disease + stroke), second is cancer, with 574,000 deaths." width="620" height="auto" class="alignnone size-full wp-image-29475" /></a></p>
<div class="attrib">Data from: <a href="http://www.cdc.gov/nchs/fastats/lcod.htm">Centers for Disease Control and Prevention</a></div>
<div class="caption">Cardiovascular disease outranks all causes of death in the United States, including cancer.</div>
</div>
<h3>Not an easy project</h3>
<p>
  Heart muscle dies when a blood clot blocks the blood supply. Heart muscle does not regenerate, and a major attack can cause death or a lifetime of heart disease.</p>
<p>
  So why have injections of heart muscle cells grown from stem cells produced only transitory benefits? &#8220;There is a battle between the heart and what it is willing to receive,&#8221; says Warren Sherman, director of cardiac cell therapy at Columbia University Medical Center.</p>
<p>
  &#8220;Even with normal heart architecture, it&#8217;s not a very friendly place for cells to find a home,&#8221; Sherman says. &#8220;The fluid flow rate is so high that many things get pushed out.&#8221; And in the areas that are scarred by heart attack, &#8220;there is nothing for the cells to adhere to.&#8221;</p>
<p>
  As a result, &#8220;Cell retention rates are just horrible,&#8221; Sherman says. &#8220;You are lucky, with any [heart] disease, with any delivery method, if you have 5 percent of the cells present 24 hours later.&#8221;</p>
<p>
  The brain or pancreas, two other potential  sites of cell therapy, do not suffer from these hindrances.</p>
<p>
  Researchers have injected muscle cells into blood vessels, inside or outside the heart.  They have also injected cells into the muscle of a heart that is still beating. A batch of stem cells can also be seeded onto a &#8220;patch,&#8221; a fibrous glob that gloms onto the damaged muscle.</p>
<div class="bullets">
<h3>Cardiac clinical trials are difficult for a number of reasons:</h3>
<p>
* <strong>Source:</strong> Clinical trials have mainly used cardiac cells grown from induced pluripotent stem cells, often grown from the patient&#8217;s own skin cells. This process  eliminates the risk of immune rejection but can carry the risk of sparking a tumor. Investigators are now exploring a wider range of stem cell sources.</p>
<div class="box400">
<iframe width="400" height="300" src="http://www.youtube.com/embed/9NGcLngdd8s?rel=0" frameborder="0" allowfullscreen></iframe></p>
<div class="attrib">Video courtesy Xiaojun Lian, department of chemical and biological engineering, <a href="http://www.youtube.com/watch?v=9NGcLngdd8s">UW-Madison</a></div>
<div class="caption">Cardiomyocytes, the beating, muscle cells of the heart, can be made from stem cells in the laboratory to model heart disease and test drugs. Researchers  are trying to prove that they can be used for cell replacement and other treatments.</div>
</div>
<p>
<strong>* Differentiation:</strong> The methods used to coax stem cells to become heart muscle cells can affect results, and must be standardized before regulatory approval.</p>
<p>
<strong>* Patients:</strong> The criteria for including and excluding patients can affect results. For ethical reasons, trials have focused on the sickest patients, but they  tend to have conditions like diabetes that disqualify them from study. Studies that use magnetic resonance machines to quickly assess the results must exclude the many heart patients who carry pacemakers and cannot go near the MR&#8217;s super-magnets.</p>
<p>
<strong>* Patients, again:</strong> People are getting quite choosy about joining trials, says Andrea Hunt, vice-president of Baxter International. &#8220;The Internet allows people to go far and wide looking for options.&#8221; Clinical trials offer hope, but participants are usually not guaranteed to get the actual treatment; up to half get a placebo instead.</p>
<p>
<strong>* Complexity:</strong> Stem cells are vastly more complicated than medicines, says Timothy Kamp, co-director of the Stem Cell and Regenerative Medicine Center at the University of Wisconsin-Madison. &#8220;Drug companies say that even a small molecule, from concept to FDA approval, will take 10 or 15 years. And a drug is something  we can chemically define, it has a structure, we can purify it. With a cell you are talking about 100,000 molecules all mixed  up, dancing a complicated dance. It&#8217;s harder to control, but more powerful than a single molecule. This is going to take time to master, to find the right cell for the right job.&#8221;</p>
</div>
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<a href="http://whyfiles.org/wp-content/uploads/2013/04/stem_colony1.jpg" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/stem_colony1.jpg" alt="View from microscope of multi-component cells that appear complex in structure." title="View from microscope of multi-component cells that appear complex in structure." width="300" height="auto" class="alignnone size-full wp-image-29503" /></a></p>
<div class="attrib">Image: <a href="http://photos.news.wisc.edu/photos/4839/view">Jeff Miller, UW-Madison</a></div>
<div class="caption">Microscopic view of a colony of human embryonic stem cells from the James Thomson lab at the University of Wisconsin-Madison. These cells, which arise at the earliest stages of development, are blank slates capable of differentiating into any of the 220 types of cells or tissues in the human body. In 1998, Thomson&#8217;s group was the first to isolate human embryonic stem cells.</div>
</div>
<h3>Got the money?</h3>
<p>
  The large, phase III clinical trials needed for FDA approval of a biological treatment typically enroll hundreds of patients at multiple sites, which can be hideously expensive. &#8220;Any phase III trial is going to cost at least $100 million, and it goes up from there,&#8221; says Hunt.</p>
<p>
  Even when preliminary results are promising, trials can be torpedoed when the sponsoring company changes its business goals, is bought out, or runs short of money.</p>
<p>
  For example, the &#8220;<a href="http://clinicaltrials.gov/show/NCT00526253">MARVEL</a>&#8221; study, which grew stem cells from the patient&#8217;s muscle into early-stage heart muscle cells, or myoblasts, produced &#8220;a strong indication of improvement in symptoms and exercise capacity in 21 patients,&#8221; says Sherman, who played a role in the trial. &#8220;It was safe, but the company [Bioheart, Inc.] was <a href="http://www.bioheartinc.com/assets/press/ShareholderletterannouncingnewcapitalandNorthstarnotepayments-final.pdf">broke</a> … and that&#8217;s how it ended. Whether the results were positive or negative, we would have put up a number, and that number still does not exist.&#8221; </p>
<p>
Stem cell trials must also account for procedures in particular medical fields, said Ann Remmers of <a href="http://www.aastrom.com">Aastrom Biosciences</a>. After a recent stem-cell trial for chronic limb ischemia, which reduces blood flow and can require amputation, &#8220;we needed to think through the practice patterns of vascular surgeons. We wanted to treat subjects who had no further options for surgery, but the surgeons we work with are very talented,&#8221; and were able to do reparative surgery until shortly before amputation was needed. &#8220;The vascular surgeons are making the decisions based on what is best for the patient, and we needed to have thought more about how to integrate the trial into their practice,&#8221; Remmers said.</p>
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<a href="http://whyfiles.org/wp-content/uploads/2013/04/heart_infarction.jpg" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/heart_infarction.jpg" alt="Pink, dense muscle forms two rings around  ventricle and atrium. Dark area shows damage." title="Pink, dense muscle forms two rings around  ventricle and atrium. Dark area shows damage." width="398" height="auto" class="alignnone size-full wp-image-29506" /></a></p>
<div class="attrib">Patrick Lynch, <a href="http://en.wikipedia.org/wiki/File:Heart_ant_wall_infarction.jpg" rel="lightbox[29462]">Center for Advanced Instructional Media Medical Illustrations</a>, Yale University</div>
<div class="caption">Cross-section of the heart shows effects of blood stoppage (dark areas) at front of left ventricle.</div>
</div>
<h3>Special stem cell delivery</h3>
<p>
  To date, stem cells have not done much to help people with heart disease. Despite some limited improvement, by six months, the benefits have generally washed out.</p>
<p>
  &#8220;Typically you just give a single dose,&#8221; says Eric Schmuck, who works with Amish Raval, an assistant professor of cardiovascular medicine at UW-Madison. &#8220;Nobody has done two doses.&#8221;</p>
<p>
  And so Raval and Schmuck are testing a two-dose &#8220;prime and boost&#8221; strategy. The <a href="http://en.wikipedia.org/wiki/Mesenchymal_stem_cell">mesenchymal stem cells</a> they are using originate in the placenta, and are known to fight inflammation, slow down the immune system, and promote blood-vessel growth.</p>
<p>
  In an ongoing test with pigs, the prime dose is given intravenously shortly after blood flow to part of the heart is stopped, Schmuck says. The resulting inflammation seems to attract the stem cells, which calm the inflammation.</p>
<p>
  Thirteen days later, 13 injections of the booster dose &#8212; totaling about 100 million cells &#8212; are squirted into the edge of the damage. &#8220;The first dose alters conditions to make the heart more receptive to the second dose,&#8221; Schmuck says. &#8220;When you reduce inflammation and stimulate blood-vessel growth, the cells have an easier time grafting.&#8221;</p>
<p>
  The experiment is ongoing, but there are early measurements in blood pressure and volume, and heart size and weight, Schmuck says. The treated hearts show a more regular heartbeat, without a systemic immune response.</p>
<p>
  Curiously, Schmuck doubts that the benefits come from cell replacement.  &#8220;I think the cells secrete good vibes, juices, that either attract innate stem cells from the heart or help preserve heart muscle cells that are damaged.&#8221;</p>
<p>
  If the study continues to be safe and beneficial, the researchers hope to propose a small human  trial of prime and boost within a couple of years.</p>
<div class="box300left">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/1culture_dish2.jpg" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/1culture_dish2.jpg" alt="Latex gloved hand holds plastic plate with six circular wells while pipette hovers to deposit liquid into one of the wells." title="Latex gloved hand holds plastic plate with six circular wells while pipette hovers to deposit liquid into one of the wells." width="300" height="auto" class="alignnone size-full wp-image-29483" /></a></p>
<div class="attrib">2007 photo by <a href="http://photos.news.wisc.edu/photos/6791/view">Jeff Miller, UW-Madison</a></div>
<div class="caption">A researcher changes media in cultures of human embryonic stem cells in the department of animal sciences at the University of Wisconsin-Madison.</div>
</div>
<h3>Meeting your matrix</h3>
<p>
  In the body, most cells grow in a mushy, 3-D world, but in the lab, they grow on hard, flat dishes. This discrepancy may account for some of the difference between real life and lab-life results, says Brenda Ogle, an associate professor of biomedical engineering at the University of Wisconsin-Madison.</p>
<p>
  Ogle is exploring structures to hold stem cells in a more lifelike configuration, and she finds that mesenchymal stem cells differentiate much as they do on a 2D dish, when held in a lab-built 3D structure of polyethylene glycol.</p>
<p>
  However, the timing of differentiation is different, Ogle says, possibly due to altered activation of cell-surface receptors, or to the fact that &#8220;tissue culture takes place on a stiff, rigid surface,&#8221; while the 3D structure is more flexible. </p>
<p>
  The 3D structure that Ogle is testing contains bits of extra-cellular matrix (ECM) proteins, such as collagen, which normally separates cells. &#8220;People used to think of ECM as girders and beams, a structural support for cells,&#8221; says Ogle. &#8220;We now know that it has other important functions,&#8221; such as storing growth factors.  &#8220;If there is tissue trauma and the ECM breaks down, that may release growth factors that help the tissue respond to damage.&#8221; </p>
<p>
  Ogle&#8217;s goal is to build a patch that could stick to the heart and deliver stem cells. Although a  disturbing number of cells are flushed away with existing delivery technologies, Ogle&#8217;s lab has achieved 70 percent retention by delivering mesenchymal stem cells on a patch made of cow collagen. </p>
<h3>Endothelial cells to the rescue?</h3>
<p>
  On the inside, of blood vessels are lined with endothelial  cells that help regulate blood pressure, prevent clots, and regulate transport of molecules in and out of blood.  Endothelial problems are a cause and symptom of a variety of conditions, including stroke, diabetes and coronary artery disease.</p>
<div class="box200">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/capillary_network.jpg" rel="lightbox[29462]">
<div class="enlarge">ENLARGE</div>
<p><img src="http://whyfiles.org/wp-content/uploads/2013/04/capillary_network.jpg" alt="Rows of bright orange webbing of a delicate nature." title="Rows of bright orange webbing of a delicate nature." width="200" height="auto" class="alignnone size-full wp-image-29511" /></a></p>
<div class="attrib">Spike Walker, <a href="http://www.flickr.com/photos/wellcomeimages/5814146139/">Wellcome Images</a></div>
<div class="caption">Capillaries &#8212; small blood vessels that connect arteries and veins &#8212; often exist in networks called capillary beds that supply organs and allow for the exchange of gases and delivery of nutrients. These capillaries are involved in secreting aqueous humour, a liquid that nourishes the front of the eye.</div>
</div>
<p>
  Could endothelial cells play a role in organ regeneration? Yes, says Shahin Rafii, a Howard Hughes Medical Institute investigator at Weill Cornell Medical College. &#8220;People think of endothelial cells as inert conduits to deliver oxygen and nutrients. We think maybe they can be the magic bullet, that we can transplant them to promote organ regeneration.&#8221;</p>
<p>
  Like the prime and boost example, the effect is less likely to be cell replacement and more creating a hospitable niche for existing heart cells.</p>
<p>
  The cells that line capillaries are in a unique position to affect stem cells, Rafii says. &#8220;Every stem cell, everywhere, resides next to a capillary. If I tweet a molecule through the capillaries, within seconds, every stem cell in body will know what is going on.&#8221;</p>
<p>
  Rafii adds that endothelial cells trigger growth in organs that are able to regenerate, like the liver and bone marrow. But the regrowth fails if, for example, the endothelial cells come from a different tissue.<br />
  Focusing on regeneration is an alternative path to stem-cell therapy, Rafii says. &#8220;I argue that if we can engineer organ-specific endothelial cells and transplant them, they will find the right zip code [in the target organ], and cause regeneration.&#8221;</p>
<p>
  If the endothelial cell hypothesis is unusual, so is the proposed source: cells gathered from amniotic fluid during amniocentesis, a common test for fetal health and gender.</p>
<p>
  &#8220;I believe amniotic cells can be used to regenerate bone marrow, lung and liver, if we can solve the immunology problem,&#8221; Rafii says. Discarded tissue from the 1 million amniocentesis procedures performed each year in the United States could provide an enormous, diverse stockpile of cells for transformation and transplant.</p>
<p>
  If Rafii is correct, understanding the signals from endothelial cells could be a significant advance, Kamp says. &#8220;Maybe the endothelial cells are telling the heart stem cells and other repair mechanisms to turn on. If you have sick endothelial cells, like with coronary artery disease, those endothelial cells are probably not singing the right song. If we could help them, we could help the heart.&#8221;</p>
<h3>Making sense</h3>
<p>
  Nobody can say where, how and when stem cells will become an accepted treatment for cardiovascular disease. But if you combine the  extraordinary promise of these cells with the scientific creativity and the profit potential  of any treatment that really restores heart muscle, it&#8217;s almost inevitable that hearts and blood vessels will eventually benefit from stem cell therapy.</p>
<p>
  Kamp thinks considerable progress has taken place: &#8220;Cell therapies are advancing. We are testing different cell products in patients with heart disease. The real question is what is going to be the right cell for the right job. There are different diseases with different needs, and different cell products and delivery mechanisms. All that has to be worked out, optimized and tested. Clinical  trials to develop these take time.&#8221;</p>
<div class="imgBigClear">
<a href="http://whyfiles.org/wp-content/uploads/2013/04/cvd_deathrate.jpg" rel="lightbox[29462]"><img src="http://whyfiles.org/wp-content/uploads/2013/04/cvd_deathrate.jpg" alt="U.S. deaths from CV diseases have steadily dropped, from 342 deaths per 10,000 in 2000 to 237 in 2009." title="U.S. deaths from CV diseases have steadily dropped, from 342 deaths per 10,000 in 2000 to 237 in 2009." width="620" height="375" class="alignnone size-full wp-image-29512" /></a></p>
<div class="attrib">Modified from original by <a href="http://circ.ahajournals.org/content/127/1/e6.full.pdf+html">American Heart Association</a></div>
<div class="caption">Rates of mortality are diminishing from stroke and coronary heart disease</div>
</div>
<p>
But patients are still dying, and stem cells are only available from a few small clinical  trials within the world regulated by the U.S. Food and Drug Administration. For patients, that&#8217;s frustrating, says Sherman, who has been involved with cardiac cell therapy for many years; &#8220;I feel greatly for patients out there. We have raised the level of expectation, from the moment stem cells hit the front page, and fairly so, for good reason. Yet it has dragged on, again for good reason, and we still don’t know how to advise them.&#8221;</p>
<p>
  Basic breakthroughs always seem to take too long, Kamp observes. Research into implantable defibrillators, used to stop heart attacks by stabilizing heart electrical rhythms, began in the 1960s, but they were not in wide use by surgeons until the &#8217;90s. &#8220;It&#8217;s not unusual for these revolutionary technologies to take a decade or more before they start to enter clinical  practice.&#8221;</p>
<div id="writer">
<p>
 &#8212; David J. Tenenbaum</p>
</div>
<div class="relateds">
<div style="display: none;">
<a class="simple-footnote" title="What are stem cells? Learn the basics" id="return-note-29462-1" href="#note-29462-1"><sup>1</sup></a><br />
<a class="simple-footnote" title="Interactive map: Heart disease and strokes in the Unites States" id="return-note-29462-2" href="#note-29462-2"><sup>2</sup></a><br />
<a class="simple-footnote" title="Diagram it: Visual explanation of stem cells" id="return-note-29462-3" href="#note-29462-3"><sup>3</sup></a><br />
<a class="simple-footnote" title="Is there a clinical trial near you? Find out!" id="return-note-29462-4" href="#note-29462-4"><sup>4</sup></a><br />
<a class="simple-footnote" title="In the news: stem cell research" id="return-note-29462-5" href="#note-29462-5"><sup>5</sup></a>
</div>
</div>
<div id="relateds"><h3>Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant</h3></div>
<div class="simple-footnotes"><h3>Bibliography</h3><ol><li id="note-29462-1">What are stem cells? <a href="http://stemcells.nih.gov/info/basics/Pages/Default.aspx">Learn the basics</a> <a href="#return-note-29462-1">&#8617;</a></li><li id="note-29462-2">Interactive map: <a href="http://apps.nccd.cdc.gov/NCVDSS_DTM/">Heart disease and strokes in the Unites States</a> <a href="#return-note-29462-2">&#8617;</a></li><li id="note-29462-3">Diagram it: <a href="http://nas-sites.org/stemcells/stem-cell-basics/download-stem-cell-figures/">Visual explanation of stem cells</a> <a href="#return-note-29462-3">&#8617;</a></li><li id="note-29462-4">Is there a clinical trial near you? <a href="http://www.clinicaltrials.gov/">Find out!</a> <a href="#return-note-29462-4">&#8617;</a></li><li id="note-29462-5">In the news: <a href="https://www.google.com/search?q=site%3Acdc.gov+heart+transplant+photo&#038;oq=site%3Acdc.gov+heart+transplant+photo&#038;sugexp=chrome,mod=5&#038;sourceid=chrome&#038;ie=UTF-8#q=stem+cell+research&#038;source=univ&#038;tbm=nws&#038;tbo=u&#038;sa=X&#038;ei=QIRtUbTCB4GR2wWss4DwBQ&#038;ved=0CMIBEKgC&#038;bav=on.2,or.r_cp.r_qf.&#038;fp=cdd9f9faf67cfd29&#038;biw=1420&#038;bih=800">stem cell research</a> <a href="#return-note-29462-5">&#8617;</a></li></ol></div>]]></content:encoded>
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