Mapping evolution

“Nutcracker” fish shows evolution in action

In biology, odd is awesome. Charles Darwin, famously, struggled with the peacock’s outlandish tail. You might have wondered why the rhinoceros has a horn. We wonder why the narwhal has a tusk-like tooth and looks like an underwater unicorn.

Christopher Martin, a Ph.D. student at the university of California at Davis, wants to know why the common pupfish, found in wetlands from Massachusetts to Venezuela, does not share its ponds with related pupfish species.

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Small, silver fish swimming near bottom of water body, surrounded by short grasses and suction-cup-like plants.

Image courtesy of Chris Martin
This generalist pupfish, in its natural habitat on San Salvador Island, Bahamas, doesn’t have much of a nose. Check out the impressive hood ornaments on the closely-related fish down below!

The lone exception occurs in the Bahamas, where two sister pupfish species evolved from a common ancestor in ponds that are just 10,000 years old.

Three pupfish species live in the pond in question, says Martin, who was first author of the new study:

one generalist that eats a wide variety of food, including seaweed

a parasite that (ecch!) eats scales from other pupfish

a shellfish-eating carnivore with a honking big “nose”

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Two fish. Left: iridescent brown with enlarged bottom jaw. Right: light orange with enlarged nose structure.

Images courtesy Tony Terceira
Left: The Cyprinodon scale-eater is a unique pupfish that eats scales from other fish. Right: Cyprinodon durophage is a specialist pupfish with unique, protruding nasal appendage suited to eating shellfish (clams, anyone?). These pupfish are endemic to San Salvador Island, Bahamas.

The shellfish eater “is bizarre. It’s essentially a fish with a nose; it has a swollen nasal region and the jaw tucks up underneath,” says Martin, and “no one knows what it is used for. Possibly the nose stabilizes the jaw to help crush prey, or females use it to discriminate among males, or it could be a sensory organ. The nose is not just a nutcracker.”

These pupfish are a recent example of adaptive radiation, a rapid evolution of species that occurs after an organism reaches new habitat with empty ecological niches. But why do distinct new species arise, instead of a mishmash of in-between traits?

Trouble is…

How, exactly, does adaptive radiation take place? Offspring of genetically dissimilar parents usually lack the abilities of their parents, and die out, which makes it difficult to transition toward a new ability, like stripping scales or shucking clams.

To study how changes in phenotype (genetically determined behavior and structure) affect survival, biologists create graphs that look like mountains maps.

Survival of fish in wild plotted against jaw shape shows higher survival for two of the three fish studied.

San Salvador Island, Bahamas, courtesy Christopher Martin
This plot relates the survival of three types of pupfish (vertical axis) to the shape of their jaws and bodies (horizontal axes). These fish resulted from adaptive radiation during the past 10,000 years.

On these graphs, peaks show phenotypes with enough offense, defense and presumably reproductive ability to pass along their genes to posterity. But when diverse individuals mate, the hybrids must “jump between the peaks.” They may form a new species, but are more likely to drop into “death valley.”

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Open pond surrounded by vegetation, with study plot at the edge enclosed by black netting supported by white, plastic pipe.

Image courtesy of Chris Martin
Martin used this field enclosure, in Crescent Pond on San Salvador Island, Bahamas.

To figure out how two new pupfish evolved from their common ancestor (the generalist shown in the top photo), Martin cross-bred members of the three pupfish species. (The species could cross-breed because they are still closely related, after such a brief evolution.)

But the offspring were oddballs, says Martin, who worked with Peter Wainwright, a professor of evolution and ecology at Davis. “Eighty percent of the hybrids look nothing like what you find in the wild.” When he returned, the hybrids that had survived “nearly exactly matched the original species.” In other words, there was little room for blended phenotypes; these fish occupied the deadly lower regions of the graph.

Adaptive radicals

The study addresses a mystery from Hawaii and the Galapagos Islands, hotbeds of adaptive radiation. “We have no idea” why some birds, through adaptive radiation, left many related species, while other species did not, Martin says.

The new maps could explain the rarity of specialists in pupfish ponds, Martin says. “When people talk about adaptive landscapes, classically, they think the population should move uphill” to a higher level of adaptation.

But even though the shellfish eaters were more fit in the Bahamas, “The generalists are isolated by a ‘fitness valley’ between them.”

“It’s remarkable,” Martin says. The experiments were done in small pens, “and this means there are two ways of being a pupfish and surviving, even in this small enclosure.”

— David J. Tenenbaum

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Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Bibliography

  1. Multiple Fitness Peaks on the Adaptive Landscape Drive Adaptive Radiation in the Wild, Christopher H. Martin and P.C. Wainwright, Science, 11 Jan. 2013.
  2. Salt or fresh? How fish survive in different types of water
  3. Taking the long view: Fish as they first appeared on earth
  4. What’s the latest news on fish evolution?
  5. The Story of the Prehistoric Fish

Odder than odd!

In the dark days of winter…

We need a pick-me-up. Let’s take a guided tour of some amazing — and actually important — science results from the year just passed. What is the unseen levy of leaning? Who lives in your belly button? What are the culinary quirks of dung beetles?

Dung beetle says: It’s dang delicious!

It’s work that somebody had to do: Scientists at the University of Nebraska explored the culinary preferences of dung-eating beetles — the janitorial janissaries of the arthropod army.

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Two broad, flat beetles roll a ball of dung across sandy soil.

Photo: John Friel
Two dung beetles roll a ball of dung in Odzala National Park, Republic of Congo. Dung beetles distribute dung (and therefore nutrients), serving as a first step in nature’s comprehensive recycling system.

We care (at least, somebody cares!) because when exotic animals (such as the ostriches, antelopes and emus at game farms) enter an ecosystem, the local cleanup crew may lay down their plungers.

You don’t need a Ph.D. in plumbing to understand that a fecund fountain of feces makes a mess of that ol’ home on the range. In Australia in the 1700s, native dung beetles turned up their probosci at the manure left by cattle imported by European settlers, leading to an outbreak of flies and parasites.

Using dung and carrion as bait, the Cornhusker scientists captured more than 9,000 beetles in 15 species over two years. They found that omnivore offal attracted the most beetles.

Why? Omnivore dung, including the human product, rates a “10″ on the stink-o-meter. And that brings on legions of these gentle janitors.

The only sad note: Chimpanzees edged humans by a nose as durn-delectable delicacies for the dung dragons.

Separation anxiety, placental edition

Just like everything else alive, bacteria need a niche. One long-ignored condo forms when the placenta is severed just after birth.

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Dense cluster of yellow dots against brown background on agar plate.

Staphylococcus bacteria can cause serious disease, but Staphylococcus epidermidis (shown here) is usually a first line of defense against skin disease. When oxygen is scarce (like deep in your belly button!), S. epidermidis switches to fermenting sugars. Ecch: are you brewing “navel wine”?

You read that right. We are blathering about the belly button, which has become a bountiful bacterial bestiary.

A citizen-science project called Your Wild Life has been using giga-speed sequencing of the genetic code to examine microbes retrieved from human belly buttons.

The first 60 button-loads held 29 to 107 types of bacteria apiece — for an average of 67 per button.

The findings support an axiom of tropical ecology – that the most common species usually have the largest number of individuals:

Six types of bacteria (0.3 percent of the strains discovered) lived on more than 80 percent of the buttons;

These six strains accounted for one-third of the microbes found in the project.

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Pint glass full with dark beer, topped by white foam.

The Why Files
Barkeeps take note: Patrons will likely under-estimate the percentage of alcohol in this fine beer while leaning to the left.

In tropical forests, the dominant species, or “oligarchs,” tend to occur in large numbers, and the authors found that same deal beneath the belt buckle: “Thus the hypothesis that ‘oligarchs’ dominate diverse assemblages appears to be supported by human-associated bacteria.”

Want to advance the cause of science? Your Wildlife is set to dig into the human armpit. We’re just sayin’…

Which way do you lean?

Scientists have found a novel way to put a thumb on the scale: asking people to estimate size, weight, even the percentage of alcohol, while standing on a Wii balance board. Even when the angle is imperceptible, undergraduate subjects make smaller estimates while leaning leftward.

In a game, subjects were asked to estimate a quantity about dozens of objects. The estimates were systematically lower when the person was leaning slightly to the left — even when the left leg was bearing only 52 percent of their weight.

The results support the idea that we mentally envision numbers as lined up with the smallest ones on the left. Oddly, the bias was so strong that it worked even though the people did not know they were leaning!1

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Ball of bees wrap around invisible hornets.

Yokohama, Honshu Island, Japan, Takahashi
Japanese honeybees (Apis cerana japonica) form a “bee ball” that engulfs and heats two hornets (Vespa simillima xanthoptera).

Who will be the hottest bee?

Imagine, for a moment, being a honeybee. You have an enviable defense down south, in your organic, butt-mounted stun-gun. But some enemies have evolved a hard, stinger-proof shell that prevents your chemical artillery from injecting its toxin.

If such an insect, say a giant hornet, is attacking your hive to eat your larvae and pupae, how do you protect the all-important next generation?

You could cook your enemy — if you are lucky enough to be a Japanese honeybee. These bees form a ball around a hornet with about 500 of their sisters, then vibrate their wings (which is how honeybees warm their hive over the winter). When the temperature reaches 47°C, the hornet will croak.

Sisterhood is powerful, as they used to say.

Researchers have just found that Japanese honeybees use a temperature-monitoring gene to shut down the oven before the bees commit suicide.

In other words, evolution is working to protect the bees from being harmed by a defense perfected through evolution.

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A map of London and environs resembles a snarl of spaghetti.

The center of this mess includes “the Knowledge” that London cab drivers must master before receiving a license.

Hack Hack: The brain of a cabbie

Physical work makes a muscle bigger. Does mental work do ditto for a brain? It’s a common-sense idea, but gnarly to prove. Now we get a positive response from a five-year study of London cab drivers.

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Chicken, tawny brown with white speckles, faces right, with wild crest of feathers atop head.

This Buff Laced Polish cock apparently knows a pretty female (human) face when he sees one. How come people (or at least, college students) look for the same type of pretty face as chickens?

Several years ago, Eleanor Maguire of University College London poked the skulls of experienced cabbies with an MRI and found an enlargement in the back of the hippocampus, a structure involved in memory.

But was the bulge cause or the effect? Did only people with a huge hippo’ pass the rigorous cabby exam, or did the need to memorize a meandering maze enlarge the hippocampus?

We didn’t know it either, but in order to get a license, London cab drivers must spend years “cabby cramming,” learning roughly 25,000 roads and up to 20,000 locations.

So Maguire measured, the brains of 79 applicants when they began training, and years later found enlargement in the hippocampus among 39 who passed the cabby test, but not among a control group, or those who flunked the test.

No free lunch department: those who passed the test were less able than the others to link objects and locations, likely because the front of the hippocampus was smaller than the controls.

Chicks pick pretty people pix!

It’s the standard explanation for mating choice: people seek attractive mates because evolution has driven them to unconsciously link physical beauty with health and reproductive capacity.

We didn’t guess birds would have the same preferences as college students — although we’d admit that certain college students seem on the intellectual level of fancy fowl…

In a study, the people chose the nicest face using a keyboard. Chickens chose by pecking at the screen.

The researchers concluded that the preference for attractive faces is hard-wired into vertebrate nervous system and does not reflect adaptations unique to particular species.

Probably. “We cannot of course be sure that chickens and humans processed the face images in exactly the same way,” the researchers revealed. “This leaves open the possibility that, while chickens use some general mechanism, humans possess instead a specially evolved mechanism for processing faces.”

At least the study explains why, every time we see a pretty face, we feel a compulsion to peck at the computer screen!

— David J. Tenenbaum

Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Bibliography

  1. Leaning to the Left Makes the Eiffel Tower Seem Smaller: Anita Eerland et al, Psychological Science OnlineFirst, November 28, 2011, doi:10.1177/0956797611420731

First forest: New details emerge

New light on ancient trees

It’s a basic question about the evolution of life: When was the first forest, and what lived there? For almost a century, the Riverside quarry in Gilboa, near Albany, New York, has been considered the grand-daddy of fossil forests, with hundreds of tree stumps dating from about 390 million years ago.

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Black and white drawing of forest with huge vines and palm-like trees with buttressed roots

Courtesy Frank Mannolini
The palm-like Eospermatopteris tree dominates this portrayal of the Gilboa forest about 390 million years ago.

These strange Eospermatopteris trees contained no wood, but some stood more than 10 meters tall, says William Stein, an associate professor of biology at the nearby University of Binghamton.

Although Eospermatopteris did not have leaves, it was topped by a crown of branches.

The development of trees is a milestone in the development of life on land — as trees offer habitat for animals, alter the soil and landscape, and affect the atmosphere by using up carbon dioxide.

The Riverside quarry was excavated to supply stone for a dam in the 1920s, and it was at that site that paleontologist Winifred Goldring studied fossils of big, ancient trees. Ever since, her work has been considered essential evidence for arboreal evolution.

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 Oval framed portrait of woman in black v-neck with white hair, facing stage left

Winifred Goldring (1888-1971), the first female New York State paleontologist, did pioneering work on the fossils of Gilboa.

In 2010, Stein and Frank Mannolini of the New York State Museum obtained access to the same site for 10 days after contractors exposed the old rock in a search for stone to rebuild the dam. Although many of the Eospermatopteris stumps had been removed in the 1920s, the researchers found fossils of their roots “beautifully preserved in the ancient soil,” says Stein.

Palming it

The tree is comparable to a modern palm, Stein says, with “branches that act like fronds; they are very large structures that allow photosynthesis and reproduction.”

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Shallow dirt pit along tree line with thin strings in grid pattern visible along bottom

Courtesy William Stein
Here’s the exposed floor, crisscrossed with marker strings, of the ancient forest at Gilboa, N.Y. At right, the quarry “headwall” housed new fossils of an ancestor of present-day trees.

Those branches are studded with branchlets — but no leaves — that pick up energy from the sun, Stein says. “All photosynthesis takes place on the branchlets that surround the frond; there is a hand-like structure with four fingers and hundreds of little branchlets surrounding it.”

Leaves are not the only tree feature that’s missing, Stein says. “They are without the standard woody tissue you would expect in a tree of this size, and we don’t really understand how it works. Our best guess is that they are hollow, like an overgrown bamboo, with a very extensive outer structure that is thicker in the larger trees.”

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Large brown stump on pebbles with grass and trees in background

Photo: Dougtone
This fossilized stump, from Gilboa quarry, is the base of an Eospermatopteris tree.

Heard it through the grapevine?

Eospermatopteris was known from the 1920s, but the real surprise was fossils of a large, woody rhizome plant about as big around as an anaconda. (Botanical blip: A rhizome is a vine-like plant that runs along the ground.)

This was no average rhizome — but rather a monster up to 15 centimeters in diameter. At the site — a coastal location that repeatedly flooded — the rhizome apparently cohabited with Eospermatopteris, Stein says. “We can see it growing around the root mounds, which indicates that they were well aware of the tree’s presence.”

Based on microscopic samples of mineralized plant material, “to my surprise, we found that this was an Aneurphytalian, a very early group of woody plants.”

“It’s amazing to walk around these trees, to see where they were placed, the Aneurophytales looking like snakes, to see three major tree types when we thought there was only one,” says Stein. Based on evidence from nearby sites, the site probably also featured insects and fish, although it was too early for land-dwelling animals.

Radical rhizome

The Aneurophytalean rhizome may have grown like a vine on the Eospermatopteris trees, Stein says. “There is a pretty good indication that it climbed. That makes a lot of ecological sense, but the evidence is circumstantial.”

Rhizomes are typically thought of as “prostrate or semi-prostrate, producing leaves that go upward,” says Stein. “This is in our heads, based on botanical terminology, as opposed to the actual plants, which will do whatever they want” based on the abilities evolved by their ancestors.

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Sepia picture of rocky clips framing forest of tall trees

Gilboa Devonian Forest Exhibit, New York State Museum
This exhibit, based on research by Winifred Goldring, was highly influential in shaping early views of ancient forests.

Whether it was a rhizome or a vine, Stein says the Aneurophytalean is also a very early ancestor of all woody, seed-bearing plants. “Ultimately, wood was good invention,” says Stein. “Once it had the capability to grow, there is nothing beside orientation and some structural adaptations standing in the way of these rhizomes becoming a tree. They inherited the earth.”

– David J. Tenenbaum

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Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Bibliography

  1. Surprisingly complex community discovered in the mid-Devonian fossil forest at Gilboa, William E. Stein et al, 1 March 2012.
  2. Photo gallery of Gilboa Devonian Eospermatopteris Fossils
  3. Winifred Goldring: The first woman to be New York State Geologist
  4. Goldring inspired an award for women geologists
  5. “Naked Trees Dominated Early Forests“: More about what Gilboa fossils reveal
  6. The Virtual Petrified Wood Museum

Dr. Darwin teaches robot!

In robot education, does evolution beat all?

Robots are great at what they do — if the job is dull and predictable. Throw in the unexpected, and robots can do the unpredictable.

Courtesy Josh Bongard, University of Vermont
Josh Bongard built this gawky Lego robot, and taught it to (rollover) stand, trot and canter. Those complex linkages allow the legs to extend during the robot’s “life.”

The task of programming a robot’s brain for the real world can be gnarly, says Josh Bongard, an assistant professor in the University of Vermont College of Engineering and Mathematical Sciences. “It turns out that building a robot, and programming it to do something interesting is a very non-intuitive process, and it’s a difficult one for humans to do well.”

The real world, he says, “is quite messy.”

Robots, in the jargon, need “adaptive behavior” to accommodate changing circumstances, says Bongard. When programming a free-roaming robot, “We are not likely to factor in a lighting change or people moving in and out of the field of view.”

It’s not clear how animals or people make adaptations, Bongard says, “and so it’s difficult to program a robot to do them.”

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range arm-like machine welds a metal frame

It’s not too hard to teach industrial robots — like this welder — so long as every project is identical to the thousands before it.

Robots: Are they alive?

Bongard, like a number of roboticists, is turning to biology for answers. But he does not want to emulate living structures. Instead, he wants to use evolution to craft robot control.

The process is akin to the “artificial selection” that helped lay the foundation for the science of evolution. Darwin, after all, wrote about how animal breeders had changed their livestock by repeatedly breeding the best animals and eating the rest.

In January, 2011, Bongard reported that he had taught four-legged, digital robots to stand and run toward a light source, by grading their control software on its ability to meet those goals.

Adaptive behavior was necessary, he says, because the light source could appear anywhere, or even take evasive action, “so the robot can’t just move its legs blindly every time.”

The robots had five seconds to do or die, and their first movements were grotesque because the control software initially moved their body parts at random. After every attempt, the control programs were graded by their ability to walk, stay upright and approach the light.

It’s brutal. More than 100 million failed programs went to the virtual graveyard in the name of science, Bongard says. The programs that showed some promise were retained, randomly varied and re-tested.

The same process is found in nature, where successful genes that face random mutation are re-tested by tomorrow’s environment.

Like the average biological mutation, the mutated robot software usually failed. But over a year of supercomputer time — equivalent to 1,000 years on a desktop computer — the winning programs evolved the ability to walk toward the light.

Courtesy Josh Bongard, University of Vermont.
Watch a floundering, random robot learn to walk!

Weird winners

Considering the amount of trial and error, that was a satisfying but not necessarily surprising result. But here’s something to chew on. Bongard found that robots “born” with four legs had a handicap. During repeated simulations, the robots that started as snakes and developed legs during the five-second experiment were much quicker to learn the task.

You might guess — we would have — that the quick learning would have occurred in robots with full-time four-leg drive, given their longer experience with legged locomotion, but Bongard says the leg-free starters benefited by chunking the challenge: a) learn to approach the light, and b) learn to walk.

These robots “could evolve the ability to go from point A to point B while they still look like a snake, they don’t have to worry about balance, because they are already on the ground,” Bongard says. “Once evolution has figured out how to move toward the light, the ability to move on four legs could evolve.”

Meanwhile, the four-legged counterparts may still be flipping, flopping and floundering (Note to self: sell soul as political hit-man if science-writing gig crash-burns?) “The robots that had to stand upright would fall over, and it took evolution a long time to master balance,” Bongard says.

The approach — take the winners and vary them for a retest — resembles directed chemical evolution, which aims to create a better antibiotic by modifying and retesting molecules that show some ability to kill bacteria. “It’s basically the same idea,” says Bongard, “but instead of a candidate drug, we have virtual robots, and instead of selecting for … resistance to disease, they are selected for the ability to get to the light.”

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Man in top hat sits drinking tea on a sidewalk with a human-sized robot man, two people look on in background

We’re guessing this ancient attempt at a robot, who is tea timing with its inventor Captain W.H. Richards in Berlin in 1930, was not taught according to the principles of evolution through artificial selection.

Robots resemble rodents?

As a final exam for the digital robots, Bongard tested their balance with a blast of air. Although the leg-less robots “had evolved into legged robots that looked exactly like the other species, they were better able to run around under simulated windy conditions,” Bongard reports.

Bongard is first to acknowledge that he is “stealing from biology to help us build better robots,” but says, “the more interesting question is what this tells us about biological evolution. This recent work suggests that robots that change their bodies gain an adaptive advantage … and you see the same radical changes in body plan in nature: in insects, reptiles and in humans as they develop from infant to adult.”

– David J. Tenenbaum

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Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Bibliography

  1. More about Bongard’s research.
  2. UVM press release.
  3. Darwinian robot evolution.
  4. Robots evolve to help each other.
  5. Predictions about robot evolution.
  6. Robotic bug reveals evolution of flight.
  7. Robotics: online exhibition.
  8. History of robots timeline.

Enter the realm of the ants

Four more ants deciphered

Using the tools of ultra-fast DNA sequencing, scientists have recently reported four ant genomes.

Before you doze off, take a moment to appreciate ants. These social insects are some of the most successful critters on the planet: Ants are invaders. Armies. Pests. Even farmers.

Ants live in colonies with dozens to millions of members, and whether judged by weight or impact, they can dominate ecosystems.

Explanations for the ants’ extraordinary success lie in their genomes – their entire catalog of genes. In the last month, scientists have published four ant genomes, adding to two published last year.

Portrait of the argentine ant, whose genome was just published.
From original image by April Nobile

One of the new genomes covered the highly invasive Argentine ant, which has spread from its native South America to Europe, California and Japan. The ant “is a species of special concern because of its enormous ecological impact,” said Neil Tsutsui, associate professor at the Department of Environmental Science, Policy and Management at the University of California at Berkeley. “When the Argentine ants invade, they devastate the native insect communities while promoting the population growth of agricultural pests.”

Round white ant trap in corner of room on floor, dozens of ants crawling around.

 

Photo: Thmazing
The Argentine ant is an ocean-crossing invader that harasses homeowners and native insects alike.

Like all social insects, Argentine ants communicate via chemical signals, and in 2009 Tsutsui ignited an ant war among friendly ants by doping them with chemicals that trigger aggressive behavior. Similar endeavors could be aided by the new genome map, which detected 367 genes for odor and 116 for taste.

Although the human genome project has yet to deliver its promised cargo of health benefits, Tsutsui said the new genome for the pesky ant “will provide a huge resource for people interested in finding effective, targeted ways of controlling the Argentine ant” by manipulating genes to interfere with mating, sparking inter-colony wars, developing repellants or luring ants into traps.

Heart-shaped ant head, has two serrated, beak-like pincers at mouth, with text 'Leaf-cutter ant' behind head.

From original photo by April Nobile
The farm-forward leaf-cutter ant evolved roughly 10 million years ago.

Ants practice agro-forestry

Another new ant genome covers the industrious leaf-cutter ant, which lives in giant colonies and farms fungus for a living. (Seen the ant-cam?)

Leaf-cutters nibble tree leaves into pieces, then haul them, porter style, to underground “gardens” where the leaves are devoured by a fungus.

This is not ornamental gardening. The fungus is the only thing these ants eat.

After million of years, the ants and fungi have evolved together, developing a serious case of co-dependency. “The ants need the fungus, and if they lose it, they die,” says Garret Suen, an assistant professor of bacteriology at the University of Wisconsin-Madison.

Suen, a key author of a recent genome of the leaf-cutter, adds that the reverse may also be true, since fungus has never been found outside ant gardens, and “it has co-evolved in tight association with the ants.”

Closeup of half dozen ants, three of which are carrying pieces of leaves

 

Give us this day our daily leaf: Leaf-cutter ant delivers leaf fragments to the garden.

This is some crazy co-evolution! The subterranean garden of one ant colony can reach a volume of 600 cubic meters. To feed the fungus, leaf-cutters ants can harvest as much as 17 percent of the leaves in a forest –- making this tiny critter the biggest herbivore in many new-world tropical forests. (Leaf-cutters don’t live in Asia, Africa or Europe.)

Other insects, like termites, house symbiotic microbes that “eat” biomass for them, but with the leaf-cutters, the symbiotic microbes live externally.

The new genome emphasizes the fundamental nature of the symbiosis, says Suen, because it showed that the ants lack a gene for synthesizing the amino acid arginine. Amino acids are building blocks of proteins, and all ants require arginine, but the pathway to make arginine in the leaf-cutter is broken, Suen says. “Presumably it used to be complete, and it’s complete in all other ants and many other social insects, except for our ant.”

When Suen and his colleagues finish analyzing the genetic sequence of the fungus, he suspects it may well show an enhanced ability to make arginine.

Dozens of red ants crawling, one in center carrying a piece of green leaf

Photo: Wolfgang Hoffmann, University of Wisconsin-Madison.
Giant colonies of leaf-cutter ants are major but indirect plant-eaters in New-World tropical forests, where they harvest up to 17 percent of all leaves. The leaves support the huge underground fungus gardens that feed the ants.
Close up of dark red ant standing alone 

The red harvester ant, native to the Southwest United States, has many detoxification genes, perhaps a response to past environmental changes. Red harvester ants have at least 344 genes related to smell, more than any other known insect.

Losing a gene

Evolution selects for genes that are needed for survival and reproduction, but since it’s wasteful to make things that have no purpose, genes that are no longer needed tend to break down or disappear over time.

Because leaf-cutter ants descended from ants that grew fungus with less sophistication, in much smaller gardens, the gene may have disappeared even before the leaf-cutters evolved between 8 and 12 million years ago, says Cameron Currie, associate professor of bacteriology at UW-Madison and study co-author. “They could have lost the genes 30 million years ago. Other symbiotic systems that are dependent on each other for nutrition have evidenced a similar loss of genes.”

The leaf-cutter also has a deficit in genes for making trypsin, an enzyme that breaks down proteins in food to make amino acids. “They are feeding on the fungus and it provides them with free amino acids, so it does not need these enzymes,” Suen says.

Another gene that evolution has shortchanged – but not totally eliminated – makes the protein hexamerin, which stores amino acids until they are needed during development. ”We think the developing brood has a constant source of amino acids from the fungus,” Suen says, “so it does not have to store them.”

Close up of brown ant with black fourth body segment and long pincers at mouth

Royalty reigns! When a jumping-ant queen dies, the workers battle to replace her. These new queens outlive their worker siblings. A recent jumping-ant genome showed that these replacement queens make many proteins linked to longevity.

Family obligations

Beyond confirming predictions of evolutionary theory, these genetic deletions could explain the long-lasting mutualism between ant and fungus, says Currie. If the ants would die without their fungus crop, they have a survivalist interest in blocking the entry of other fungi.

Although such a symbiosis looks like a great deal for both parties, cheaters can sabotage symbioses. “Evolution predicts that there should be instability, or cheating, in these cooperative relationships,” Currie says. “If I am giving a benefit to you at a cost to me, you can just take your benefit and not provide anything in return, which means you would be more successful compared to someone who cooperates and pays the cost.”

Reddish-brown, shiny head of ant, two furry feelers extend from top of head, short pincers for mouth, text behind head reads: 'Fire ant'

From original photo by April Nobile

If you take your ailing auto to the car-fix, you could save money – once — by writing a rubber check. But repeated interaction is conducive to cooperation, Currie says. “If you write a bad check, next time you will not get your car fixed, and this applies to mutualism as well.”

In the ant-fungus relationship, Currie says, “The partners just can’t go and find new partners; they are locked together.”

In other words, the deletion of the ant’s arginine gene could explain why the co-dependency has lasted upwards of 8 million years.

Leave the leaves alone!

As ants don’t do a lot of reading and talking, chemical communication will likely be a focus for further genomic analysis. Plants dislike being eaten by any herbivore, so they produce toxic compounds to deter would-be browsers. Although the ant-fed fungus can eat more than 10 percent of the species of tree in the forest, some leaves are toxic to the fungus.

How do the ants know which type of leaves will kill it’s sole food, and how do they “talk about it”? It’s clear that the ants keep an eye on their crops, Suen says. When, as an experiment, scientists treated leaves with fungicide, the ants quit collecting that species, Suen says. “The ants remember and won’t touch those trees for two weeks because they are killing the fungus. How they do this, we have no idea, but now we can do an experiment to see what genes are being turned on or off” under those circumstances, and therefore must be involved in recognizing the death, and warning the colony about it. “We are pretty sure there is some communication between the fungus and the ant,” Suen says.

The fire ant, subject of a recent genome, must contain genes for the nasty toxins it uses to defend its turf against human and insect alike.

Social structure

More broadly, information about the genes of a highly successful organism with millions of cooperating individuals ought to be intriguing to another highly successful, but sometimes less cooperative, organism that has more brains, fewer legs, and equally large cities.

Leaf-cutter ants live a complicated life, and the identical set of genes allows them to become queens, soldiers, or several types of worker. “They do this with a brain that is incredibly small, but it’s collective, hard-wired behavior,” Currie says. “It’s amazing; there are 5 to 10 million ants with many different tasks that are done by different workers of different sizes,” and it all starts from the same genes.

The genome has yet to reveal a “farmer gene,” Currie says. He expects that candidate farmer genes will emerge when the leaf-cutter’s genome is compared to close relatives that do not farm. These may explain the leaf-cutter’s curious capacity for growing its food with the help of fungi, “But we are a long way from that.”

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Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Snot Otter

Can you find the snot otter in this picture?

Snot Otter

Snot Otter

The snot otter, more officially known as the hellbender salamander or Cryptobranchus alleganiensis, is North America’s most super-sized salamander, growing up to 30 inches long. It inhabits streams and rivers from Arkansas to New York, and has evolved very little since the time of dinosaurs.

However, this incredible species is disappearing. For reasons that are unclear, many populations of hellbenders have stopped reproducing. To try to save the species from extinction, researchers from the Nashville Zoo and the Antwerp Zoo in Belgium, along with veterinarians from Michigan State University, are developing a way to freeze hellbender sperm.

Using a freezing technique known as cryopreservation, these scientists hope to create an international gene banking program that can distribute genetically viable hellbenders to re-stock streams and rivers, should we ever need to resurrect the species.

The cryopreservation technique is similar to that used for freezing human sperm. Freezing the semen stops all biological activity, including the biochemical reactions that would otherwise cause the sperm cells to die. Chemicals called cryoprotectants are added to prevent freezing damage.

Already producing promising results, this technique could become a global model for the genetic management of threatened amphibians.

Image: Todd Pierson
Source: Eurekalert

Maggots, leeches, parasitic worms

Praise for parasites!

Talk about going to extremes: In 2004, an anonymous American man with ulcerative colitis chose to eat parasitic worms instead of having his diseased colon removed. He hoped that whipworms would provide a last-ditch biological balm for painful, bloody and frequent diarrhea, and more serious complications of colitis.

If his symptoms had not improved, you would not be reading about his sojourn through planet parasite. “It did work with this individual, he seemed to get better, not just once but twice,” says P’ng Loke, a parasite immunologist at New York University who studied the case.

enlarge this image Long translucent white worm with thin whip-like tail against black background

Imagine swallowing 2000 of these guys. You just might, if you were plagued with an inflammatory bowel disease.

In the same year that Mr. A swallowed those worm eggs, two other biological treatments gained Food and Drug Administration blessing as “medical devices”: leeches for removing excess blood after surgery, and maggots for cleaning difficult wounds.

Live organisms once played a bigger role in medicine, observes Ronald Sherman, a California doctor and maggot maven. “Before we had a good method for controlling syphilis, the bacterium was killed by inducing a fever, and one of the best methods was through malaria, carried by mosquitoes.”

Ready for some greatest hits from the ancient-but-modern realm of medicinal vermin?

Wondrous whipworms

Ulcerative colitis is a chronic bowel disease that afflicts up to one American in a thousand, apparently caused by some combination of inflammation and heredity. There is no cure. To prevent holes in the colon and other nasty outcomes, the bowel is often removed — a treatment that is also used for Crohn’s, the other major inflammatory bowel disease.

enlarge this imageInside of human colon, colons walls are pinkish with dozens of little white worms stuck to them

Photo: Uma Mahadevan, UCSF
Mr. Anonymous’s colon has a heavy infestation with whipworms, which are damaging the intestinal walls. Could that bleeding be a good thing?

In 2003, Mr. Anonymous was diagnosed with ulcerative colitis, and in 2004, he went to Thailand and ate 500 eggs of Trichuris trichiura, a parasitic helminth worm, and then 1,000 more.

The symptoms abated, and when they returned in 2008, Mr. A, who’s now 35, slurped 2,000 more whipworm eggs, and again his symptoms receded.

There is some support for the idea that parasitic worms can help with ulcerative colitis. Whipworms infest almost a billion people around the world, and colitis is scarce in infected regions. Animal tests, and one human trial1 suggest that parasitic worms can help with ulcerative colitis.

This story of salvation courtesy of planet parasite might be dismissed as another tall tale told over a tall goblet of organic wheat-grass at the Health-4-All-Spa, except that Mr. A came under the scrutiny of medical experts2 eager to explore the effect of parasites on one ulcerated colon.

Although eating worm eggs twice reduced the symptoms, one person does not constitute scientific proof, says Loke, a parasite expert. “The question is whether it would work for everyone, and for whom it would do more harm than good; that’s what we worry about.”

enlarge this imageA few translucent bright pink oval-shaped eggs and some circular ones, each with darker matter inside

Image: Kimberley Evason, UCSF
Stained Trichuris trichiura eggs inside a worm from the ulcerative colitis patient who infected himself with these whipworms.

Whipped into shape?

The study did pinpoint a mechanism of help, and surprisingly, it was not, as expected, via a dampening the immune system. “When we analyzed this patient, we started thinking that the protection may be more related to restoring mucus production,” Loke says.

Mucus protects the intestinal lining from bacteria and other dangers, and Loke and his colleagues think the worms accelerated activity in genes involved in producing mucus, through a stimulating chemical called IL 22.

A second benefit probably came from faster growth of cells lining the intestine, Loke added. “We know from mouse studies of Trichuris that the mechanism of expelling the parasite from the gut involves a combination of turning over epithelial cells so worms will get sloughed off, and an increase in mucus production.”

Immunology still matters, he says, but it may be that the worms are triggering a protective immune response rather than immune suppression.

Before worms could be considered a treatment for ulcerative colitis, “we hope to understand the mechanism a bit better,” says Loke. “In the ideal situation, we’d like to activate this response without using the worms themselves.”

Amen.

Light pink tube with red spots down the middle and an ovular cell at its wall that looks like an opening

Photo: Professor David B. Fankhauser, University of Cincinnati Clermont College.
Goblet cells (arrow) in the intestinal lining create protective mucus. Increased mucus production could explain how whipworms treat ulcerative colitis.

Worms v. asthma

There’s been some hope that regulating the immune system could help with asthma, but the improvements in patients in a clinical trial3 of hookworms were, disappointingly, not statistically significant.

A 5-centimeter wound

Rollover to see effects of maggot treatment

open wound, with whitish liquid covering much of it

BEFORE: After 18 months of conventional treatment, this wound was infected with dangerous methicillin-resistant staph aureus (MRSA) and covered with a thick layer of a dying tissue called slough.
AFTER: Six days later, after three maggot treatments, the same wound is free of slough and rich in granulation tissue, which supports healing and scar formation. MRSA could not be detected. All credit to those creepy-crawly maggots in the middle!
Evidence Based Complementary and Alternate Medicine4 and Oxford University Press (creative commons license)

But 13 of the 16 patients who swallowed hookworms decided not to get de-wormed afterwards, which suggests some perceived benefit, admits study author John Britton, in the division of epidemiology and public health at the University of Nottingham (United Kingdom). “We weren’t able to measure anything objective; hence the implication that larger, longer (and simpler) trials are needed.”

If you are tempted by do-it-yourself worm treatment for asthma, Britton has simple advice: “Don’t. There’s no evidence that it works.”

Both the benefits and the risk remain to be documented, says Loke, who tracked Mr. Anonymous, “and we don’t understand that fully. Worms can cause symptoms of colitis” and in the case of Mr. A, “are causing damage to the gut. But we think the gut is activating a healing response against the worms, and one benefit of that is the side effect of helping colitis.”

Marvelous maggots

While people have long used live organisms for medical purposes, many trace the scientific foundations of maggot therapy to World War I, when surgeon William Baer observed that maggot-infested wounds were often the cleanest and quickest to heal.

enlarge this imageClose-up of green-bodied fly with big red eyes perched on bright yellow flower

Baby animals usually are cuter than the adults, but nobody told the green bottle fly!

In 1929, Baer reported complete success after treating 21 bone infections with maggots, and fly larvae quickly gained acceptance for wound treatment. But when antibiotics became widespread in the 1940s, healing became simply a matter of sprinkling a magic powder, and maggots were forgotten.

With diabetes becoming epidemic, and with so many bacteria immune to antibiotics, maggot use is again on the upswing. One key use is treating foot ulcers: slow-healing sores that affect about 15 percent of people with diabetes, and force 70,000 amputations each year in the United States.

Maggots are usually used to clean wounds, but they have many capabilities:

Removing dead tissue, using their raspy exterior as biotic sandpaper

Secreting enzymes that break down proteins in the diseased tissue, which the maggot then ingests

Improving oxygen supply to the wound

Killing bacteria — In one German study5, maggot secretion was as deadly as antiseptic

Attacking biofilms that protect bacteria from immune and antibiotic attack A 2010 study6 showed that fluids from the blowfly Lucilia sericata caused a “complete breakdown” in biofilm, allowing two antibiotics to kill Staphylococcus aureus bacteria.

Since Baer’s time, the common green-bottle fly, Phaenicia sericata, has been the preferred medical maggot, because it devours dead tissue, but not living flesh. Flies must be sterilized before use, and because the eggs quickly hatch into larvae (maggots), air-shipment is necessary, says Ronald Sherman, laboratory director of maggot-maker Monarch Labs.

The healing never stops

Sherman says he became interested in blending entomology and medicine when he read about Baer during medical school. “I was always interested in medical entomology, the intersection of health and insects, but usually that was in the context of insects that cause disease. I was also interested in the beneficial uses of insects.”

As investigations in maggot therapy started to ramp up the 1980s, he recalls a “huge wave of resistance [that] was not all due to revulsion” at the thought of hosting insects.

Part of the problem was resistance to change, he says, especially “When that change is associated with these negative, emotional connotations: death, flies, an unhygienic environment.”

Some resistance, he says, came from doctors “who saw that patients were lining up for [maggot] treatment. People … were canceling amputation surgeries … just to give maggot therapy a try!” According to Sherman7, some studies show that maggots can “salvage” 40 to 50 percent of limbs and digits scheduled for amputation.

One study8 found that although 43 percent of patients had flies escaping from their wounds, and 19 percent eventually needed amputation, 89 percent would use maggots again.

enlarge this imageTwo transparent medicine bottles filled with medicinal maggots

Courtesy Ronald Sherman
A bottle of chemically sterilized maggots costs about $100, plus shipping. Because the adult flies can be infectious, they must be restrained with cheesecloth or a special-purpose dressing.

Flies on trial

Other studies are less definitive. For example, in a randomized trial9 of wounds published in 2009, larvae-infested leg wounds were more painful, and while maggots were better at cleaning, they did not hasten healing or reduce bacterial infections.

A review10 of randomized treatments for diabetic foot ulcers found that “one small trial suggested that larvae resulted in a more than 50 percent reduction in wound area compared with hydrogel.” (Hydrogels are new dressings that keep wounds moist.)

Why only “one small trial” for the common diabetic foot ulcers? Because the gold standard for selecting therapies requires that neither doctor nor patient know which treatment was used — but this “double-blind” is doubly difficult when the medical device is a mess of growing flies!

Sherman, who is a maggot entrepreneur as well as medical doctor, says maggot therapy ought no longer be considered a last resort. “Most clinicians come to it either because their patients, or they themselves, are at a dead end. Facing amputation, they’ve run out of options. Once they see what maggots can do, and recognize how simple, inexpensive, and relatively safe they are, they recognize that they don’t have to wait so long, and in the future will think about maggot therapy … before the wound has progressed, before the infection has progressed.”

enlarge this image Illustration of 17th century woman standing at table with leech on her left forearm, table holds large jar with leeches

Image: Rsabbatini
Leeching was standard practice until the mid-1800s. Leech saliva contains anesthetics, which could also explain why this lady is so cool, calm and collected with her slithery pals!

Maggot therapy is occurring “throughout the world,” Sherman says. “Twenty-four labs are producing medical grade maggots and providing them in 40 countries. In the United States alone, about 2,000 centers are regularly using maggot therapy. The treatments are included in textbooks, review articles on wound care and conferences.”

Leapin’ Leeches!

Leeches — bloodsucking aquatic worms — have been a part of medicine for at least 2,000 years. The Encyclopedia Britannica tells us that “Throughout most of Western history, leeching-or leechcraft-became such a common practice that a physician was commonly referred to as a ‘leech.’”

Modern-day “leeches” use leeches to drain excess blood after surgery. “The classic use is when a finger is reattached surgically,” says Kosta Mumcuoglu, a parasitologist at Hebrew University in Jerusalem. “Even if the surgeon succeeds nicely in reattaching the arteries, they often have problems with the veins, so blood can enter the finger but not return to the body. Then it’s a short time until the blood in the finger coagulates and the patient loses the finger.”

Surgeons may try to improve circulation with further surgery or anti-coagulants like heparin, says Mumcuoglu, president of the International Biotherapy Society. But if circulation is still stuck, “The skin may start to turn brown or violet, and any time now, the finger is going to be lost.”

enlarge this imageGory finger with 2 leeches, gauze, and visible suture line.

Courtesy Kosta Mumcuoglu, Hebrew University11
After finger-reattachment surgery, leeches excess blood that would otherwise clot and kill the finger. Those white objects are holding the surgery tight. Children whose fingers have been caught in doors are major beneficiaries of this surgery, but snowblowers can also amputate fingers.

Evolution plays two contrasting roles in our story: To avoid bleeding to death, mammals have evolved a powerful “coagulation cascade” that clots blood outside blood vessels. Because clotting could be deadly to leeches, they, like their bloodsucking brethren the ticks, mosquitoes and vampire bats, have evolved anti-coagulants.

One chemical in leech saliva, for example, blocks thrombin, which helps platelets clump to start a blood clot.

Not only do leeches produce prodigious amounts of clot-blockers, but they also have chemicals that relax blood vessels, which contributes to their utility in surgery. In 2004, leeches garnered FDA approval as a “medical device.”

The chemicals in leech saliva, aided by some manual clot removal, ensure that the skin around a surgery will bleed for hours or days after leeching. Even though the patient may need a blood transfusion, after a few days, “new blood vessels are growing in the area, and the circulation becomes normal, and we have a good feeling that we have saved the finger,” Mumcuoglu says.

Medical care for the medicinal leech (ca. 184112)

“Whenever any disease prevails amongst the leeches, (and it is always of an epidemic nature), [a leech expert] recommends us to separate the dead from the suffering and healthy, and place the latter in separate earthen jars; to about fifty leeches we should give three quarts of rain water of about a month’s standing, of a medium temperature, adding to it about two pints of charcoal: after three days, the water should be changed, but the charcoal may remain.”

Good to know. And when the little bloodsuckers get hungry…

Leeches also secrete anti-inflammatory compounds that are being tested against diseases linked to inflammation. In a randomized trial13 in Germany, four to six leeches, which attached for an average of 70 minutes, led to a significant decrease in pain of osteoarthritis of the knee after seven days, compared to the anti-inflammatory drug diclofenac. Leech treatment also significantly improved stiffness, function and general arthritis symptoms, for the entire 91-day study.

In 2008, the same researchers14 found that leeches. when compared to diclofenac, produced significant benefits in pain, mobility and quality of life for osteoarthritis of the thumb.

Solution: Outsourcing?

Still, leeches may never regain their former medical prominence. In London, in 1846, “at least tens of millions of leeches” were imported each year. A reservoir in Norwich, one author15 wrote, “might at least aid in supplying the quantity needed for our own consumption, instead of being almost entirely dependant, as we at present are, on a foreign supply.”

Modern leeching also faces modern problems:

Leeches can carry bacterial and viral disease. A study16 of a delayed infection after breast reconstruction reported infection rates from 2.4 percent to 20 percent.

Leeches may wander away from the wound and bite somewhere else, although they can be “leashed” into place with surgical thread.

Spent leeches can be infectious, and should be humanely euthanized by dunking in high-concentration ethanol. (We knew you’d ask…)

A 2007 study17 found that medicinal leeches may actually be members of three species, which raises questions about their biology and may flout the FDA, which defines this medical device as Hirudo medicinalis and nada mas.

enlarge this image

However, this last finding may be key to further progress, says Mark Siddall of the American Museum of Natural History, who led the group that identified three species. “This raises the tantalizing prospect of three times the number of anti-coagulants, and three times as many [other] biomedically important developments…”

Top: Hirudo medicinalis, the European medicinal leech. Bottom: Hirudo verbana, a related species, also used for leeching.

Did we forget what parasitologists call the “Yuck! factor”? Do patients squirm at the thought of attaching primitive bloodsuckers to their wounds? Generally not, says Mumcuoglu. “We have less problem with leeches than with maggots. We explain, ‘This is your last chance, if you don’t want to lose the finger, we have to try this.’ … Nobody has rejected the treatment.”

Terry Devitt, editor; S.V. Medaris, designer/illustrator; David J. Tenenbaum, feature writer; Amy Toburen, content development executive; Emily Eggleston, project assistant

Bibliography

  1. Trichuris suis therapy for active ulcerative colitis: A randomized controlled trial, Robert W. Summers et al, Gastroenterology Volume 128, Issue 4, April 2005, Pages 825-832.
  2. IL-22+ CD4+ T Cells Are Associated with Therapeutic Trichuris trichiura Infection in an Ulcerative Colitis Patient, M.J. Broadhurst et al, Science Translational Medicine, 1 Dec. 2010.
  3. Experimental hookworm infection: a randomized placebo-controlled trial in asthma. JR Feary et al, Clinical and experimental allergy, journal of the British Society for Allergy and Clinical Immunology, 40(2), 299-306, 2010.
  4. Maggot Therapy: The Science and Implication for CAM Part I-History and Bacterial Resistance, Yamni Nigam et al, Evid Based Complement Alternat Med. 2006 June; 3(2): 223-227.
  5. In vitro antibacterial activity of Lucilia sericata maggot secretions, Daeschlein G et al, Skin Pharmacol Physiol. 2007;20(2):112-5. Epub 2006 Dec 13.
  6. Combinations of maggot excretions/secretions and antibiotics are effective against Staphylococcus aureus biofilms and the bacteria derived therefrom, MJ van der Plas et al, J Antimicrob Chemother. 2010 May;65(5):917-23. Epub 2010 Feb 26.
  7. Maggot Therapy Takes Us Back to the Future of Wound Care: Ronald A. Sherman, Journal of Diabetes Science and Technology, Volume 3, Issue 2, March 2009
  8. Maggot therapy and the ”Yuk” factor: An issue for the patient? Pascal Steenvoorde et al, Wound Repair and Regeneration, Vol. 13, NO. 3
  9. Larval therapy for leg ulcers (VenUS II): randomised controlled trial, Jo C Dumville, et al, BMJ 2009;338:b773, doi:10.1136/bmj.b773.
  10. Debridement of diabetic foot ulcers, Edwards J, Stapley S. Cochrane Database Syst Rev. 2010 Jan 20;(1):CD003556.
  11. The use of the medicinal leech, Hirudo medicinalis, in the reconstructive plastic surgery, Kosta Y. Mumcuoglu, et al. The Internet Journal of Plastic Surgery. 2007. Volume 4 Number 2.
  12. A Treatise on the Medicinal Leech, Prov Med Surg J. 1841 June 12; 2(37): 210-211, PMCID: PMC2488764
  13. Effectiveness of Leech Therapy in Osteoarthritis of the Knee, A Randomized, Controlled Trial, Andreas Michalsen, et al, Ann Intern Med. 2003;139:724-730.
  14. Effectiveness of leech therapy in women with symptomatic arthrosis of the first carpometacarpal joint: a randomized controlled trial, Michalsen A, et al, Pain. 2008 Jul 15;137(2):452-9. Epub 2008 Apr 14.
  15. On the Medicinal Leech: (Sanguisuga Officinalis, Sav.), Thomas Brightwell, Prov Med Surg J. 1846 September 9; 10(36): 428-430.
  16. Delayed leech-borne infection with Aeromonas hydrophilia in escharotic flap wound, Ardehali B et al, J Plast Reconstr Aesthet Surg. 2006;59(1):94-5.
  17. Diverse molecular data demonstrate that commercially available medicinal leeches are not Hirudo medicinalis, Mark E Siddall et al, Proc Biol Sci. 2007 June 22; 274(1617): 1481-1487.
  18. Worms, maggots and diabetes.
  19. Worms you don’t want.
  20. Worms and herbal medicines.
  21. Old medicine is new.
  22. Medicinal leeches.
  23. NOVA: leeches.
  24. National Library of medicine.
  25. Ulcerative colitis.
  26. Inflammatory bowel disease.
  27. Goblet cells.
  28. Kangaroo Care: Back-to-the-future medicine, minus the Yuk! factor.

Holy horseradish! Ancient roots of pain

Recipe for pain

Closeup picture of light brown insect with orange eyes, tube-like mouth decending on droplet

Photo: Vince Panzano
A hungry fruit fly (Drosophila melanogaster) extends its proboscis to feed on a droplet of sugar water. The proboscis contains sensors that detect irritating chemicals such as the ones in wasabi. Quite similar sensors occur inside the human mouth.

Whether you are a cobra or a cocker spaniel, a raccoon or a raconteur, lots of natural, reactive chemicals will cause pain and possibly damage your cells. Even fruitflies quickly learn to shy away from sugar water that contains caffeine or chemicals found in cinnamon, cigarette smoke, onion and horseradish.

These chemicals trigger activity at receptors on cell surfaces which eventually results in an “ouch” signal being sent brain-ward.

In a study published in Nature this week, a group lead by Paul Garrity, an associate professor of biology at Brandeis University, showed that a major class of pain receptors have ancient roots. We are talking older than yesterday: the report shows that TRPA1 (transient receptor potential A1) receptor was found in the critter that spawned both vertebrates (green tree snakes, bullfrogs, dinosaurs and talk-show guests) and invertebrates (horse flies, crabs, quahog clams and talk-show hosts) at least 500 million years ago.

The investigation, spearheaded by Kyeongjin Kang in Garrity’s lab, showed that the TRPA1 receptor is so similar across the entire vert-invert realm that it must have evolved once, and then descended through countless generations without significant changes. “The fly and human proteins in this receptor appear, to a very, very high degree of significance, to be from a common ancestor,” Garrity told us.

The pain in Spain

Cylinder container with white plastic top, package has picture of green covered peas and red text

Photo: annia316
Horseradish, found in wasabi flavor, activates chemical receptors that can start a pain sensation.

Unlike TRPA1, many other chemical receptors, like those involved in most smell and taste, vary greatly between animals, Garrity added. “There are big families of these receptors that look quite different in different species, so there is a lot of flexibility and change, but this TRPA1 is pretty much fixed.”

When structures have remained constant over long periods, scientists conclude that the evolutionary pressures that favored them were also static. Fish retain fins because they still live in water. We retain eyes because seeing is so handy.

And the stasis of the TRPA1 receptor “suggests there has been some sort of strong evolutionary pressure in these toxic chemicals that was maintained since the receptor was invented,” says Garrity. The chemicals in question are made by plants or other organisms as self-protection, and they can damage or destroy proteins and nucleic acids, at least in high doses, and therefore are to be avoided.

Fans of horseradish and wasabi know that a nibble can be tasty but a gobble can cause an eruption of coughing.

A bulb shaped pink diagram of taste bud, showing nerve endings, sensory neurons and taste receptors

Image: NIH
A human taste bud, shown here, contains some types of chemical receptor, but the TRPA1 receptors that first formed 500 million years ago are found elsewhere in our mouths, in structures called chemical nociceptors.

Work by study co-author Doug Theobold, also at Brandeis, suggested the original TRPA1 receptor arose after the jellyfish branched away from our lineage about 700 million years ago. The first TRPA1 receptor was apparently present in the last common ancestor of vertebrates and invertebrates, which lived between 500 million and 550 million years ago.

And that means we may have the same tastes in food as fruitflies, but not jellyfish. “It’s bad enough to think about shooing the flies away from the sushi bar, but jellyfish, well, they may be on the menu, but I don’t want to see one on the stool,” growls the resident Why Files cynic.

How they did it

To explore the responses to these reactive chemicals, Garrity and his colleagues offered sugar water to fruit flies. Some of the water was tainted with pungent chemicals derived from cinnamon or wasabi. Some of the fruit flies had genetic mutations affecting the TRPA1 receptor. In some trials, the flies touched the toxic chemical with their legs; in others, they drank it.

Flies extend their proboscis (snout) toward something they want to eat, and the scientists measured this behavior as they offered a droplet of food five times. All flies extended the proboscis at the first offering.

After that, the rate of extension:

Was fairly constant (meaning the flies kept trying to drink) if only sucrose was present

Plunged when any of three reactive chemicals were in the water, but only in flies with intact TRPA1 genes. Mutants with flawed TRPA1 receptors continued to reach for the water even if it contained chemicals

Remained stable when the flies touched, but did not drink several reactive chemicals, indicating that their legs lacked the specific of TRPA1 receptors that would detect those chemicals

Dropped when the flies touched caffeinated water with their legs, which carry caffeine receptors

Curiously, when the fruitflies drank sweetened caffeine-bearing water, they turned jittery and stayed up all night, devouring junk food and cramming for a biochemistry exam. Just java jiving…

A white cloud in the street envelops many people, one holding anti-war sign, another covering face

Photo: NewsPhoto!
A protest in Strasbourg, France, April, 2009, was met by a cloud of tear gas. The pain these protesters feel probably originates in ancient chemical receptors in the nose and mouth.

So what?

Finding such a long-term similarity in a major class of pain receptors could have broad implications, Garrity says. TRPA1 receptors exist on the aphids that spread disease to many crops and the mosquitoes that carry malaria. If compounds that trigger these receptors while sparing those of benign species can be found, they could be developed into pesticides that inflict pain and cause the nasty bugs to stay away from where they are not wanted.

A second application, which may be closer to fruition, depends on the similarity of receptors between fruit flies and mammals, Garrity says.

Compounds derived from capsaicin, the active agent in hot peppers, are already used to treat pain. Although TRPA1 receptors respond to a totally separate group of pungent compounds, drug companies are already searching for TRPA1 antagonists that might treat chronic pain, asthma, arthritis or migraine headache, Garrity says.

The TRPA1 receptor responds to oxidative stress caused by nasty compounds called free radicals. “It is a key to many aspects of pain and inflammation,” Garrity says.

- David J. Tenenbaum

Bibliography

Analysis of Drosophila TRPA1 reveals an ancient origin for human chemical nociception, Kyeongjin Kang et al, Nature online, March, 2010, doi:10.1038/nature08848.

Tracking traveling toads

POSTED FEBRUARY 4, 2010

The genes of an invading toad

Why do some animals steam-roll across the landscape, commanding new territory in the manner of Genghis Khan, while others skulk around a tiny patch of marsh?

The question can also be applied to smaller groups of animals, like the toads. At one extreme, the spray toad lives only in the mist of one waterfall and has gone extinct in its native Tanzania. Meanwhile, the cane toad, a monster native of South America that was deliberately distributed to control insects on farms, has colonized Australia and Caribbean and Pacific islands, where it is busily crowding out native animals.

Closeup photo of brown toad sitting in grass with tall tree in background, toad in a resting position

The cane toad is an ecological pest in Australia, but it carries a full set of genes that enable it to occupy new habitat.

Both species are among the 500-plus members of the family bufonidae, called the “true toads.” But what distinguishes toads that can dominate new landscapes from those that must struggle to survive, and what can that tell us about how species form from their ancestors?

In a study published this week, Ines Van Bocxlaer, of the biology department at Vrije University in Brussels, identified “range expansion” traits that would, logically, make for successful invaders:

Poison glands that make the skin toxic to predators

The ability to survive dry conditions with an intermittent water supply

A large body with plenty of energy-storing fat

Heavy egg production

Image courtesy Franky Bossuyt
The Common Indian Toad (Duttaphrynus melanostictus), an optimal range-expansion phenotype that originated from tropically-adapted ancestors endemic to the Western Ghats mountain range of the Indian subcontinent.

The making of a new species

“We chose characteristics that might be related to being able to disperse,” says Franky Bossuyt of Vrije University, the study’s corresponding author. “If they don’t need too much water, or are poisonous, that’s an advantage.”

Van Bocxlaer and colleagues correlated the range expansion traits with the size of habitats occupied by particular species, and concluded that all seven traits were “highly correlated” with the area occupied by the toads in their new homes, Bossuyt said.

The researchers produced a branched genetic tree that traces back to the ancestral toads in South America, which suggested that the range expansion traits were present when the toads began dispersing to new locations between about 37 million and 24 million years ago. Afterwards, these traveling toads branched into many of the species that survive today.

The species that now live in South America, however, have fewer of the range expansion traits. “We think it is the first time this was studied in this way, correlating the range-expansion characteristics and mapping them on a phylogenetic tree,” says Bossuyt.

Photo: Simeon
A sugar cane farm in Northern New South Wales, Australia. Cane toads were brought here to control insect pests, and then became pests themselves.

Traits tell tales

These results shine a beacon on a venerable evolutionary question: do new species arise before or after they begin occupying new ground? Which is more important for promoting the development of new species: new habitat, or the traits needed to occupy it?

“Links between geographic expansions and speciation have rarely been demonstrated,” says Carol Lee, an associate professor of zoology at the University of Wisconsin-Madison. “The authors first found a correlation between life history traits that might promote range expansion and current distribution, suggesting that such traits are plausible candidates for promoting range expansions.” Then they constructed a genetic tree of the apparent range-expansion traits, and found that the traits correlated with the transcontinental movements, adds Lee, who focuses on the genetics of invasive organisms.

Finally, the researchers calculated that species were forming extra-fast during the global colonization, Lee notes. “The authors argue that this coincidence suggests that range expansion itself might have been an important driver of diversification and speciation. Thus, they argue that this might be a case where dispersal ability might drive range expansions, followed by speciation.”

“Range expansion itself,” the researchers concluded, “was an important driver of diversification in bufonids.” In other words, animals that can adapt are more likely to invade and conquer new habitats.

Photo: Image courtesy Bert Willaert
The common European toad has all the talents needed to colonize new habitat, and is widespread in Europe.

Which came first?

The differentiation of newcomers into many different species is the standard explanation for the many unique species found in islands like Hawaii. Although this “adaptive radiation” is often thought to result from the availability of new ecological niches rather than the genetic talents of the arriving organism, the new study suggests that these genetic talents may need more focus.

Because the study looks at only one example of global expansion, “the co-occurrence of acceleration of speciation with global colonization could be purely coincidental,” says Lee. “Nevertheless, this study is an elegant attempt to test the links between range expansions and speciation.”

Although Bossuyt concedes that the study may not aid the battle against the pestiferous cane toad, “if people wanted to try again to introduce some other species, they could use this method to predict if it was good disperser or not, and thus whether it might be dangerous.”

David J. Tenenbaum

Bibliography

Gradual Adaptation Toward a Range-Expansion Phenotype Initiated the Global Radiation of Toads, Ines Van Bocxlaer et al, Science, 5 Feb. 2010.

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Fishy, fishy: Errant cleaning lady gets punished!

Many individuals engage in what social psychologists call “third-party punishment.” We may enforce social codes, even laws, related to marriage, sex, sexuality, vice and property. A classic example is a good Samaritan who ignores personal risk to chase a purse-snatcher.

Third-party punishment is so common that evolutionary psychologists suspect that it has genetic roots. Because punishment takes effort and can spark retaliation, it can only have evolved if it benefits the punisher: it can help the punisher reproduce (a direct benefit), or help the community survive (an indirect benefit).

Although the roots of human third-party punishment may have nothing to do with evolution, evolutionary psychologists often assume that its major benefit is indirect: I promote social stability by chasing a purse-snatcher. In stable society, I can have more children. Hence in evolutionary terms, chasing a purse-snatcher has indirect benefits.

Light blue fish with bright orange and yellow markings swimming with smaller fish nearby

Courtesy Gerry Allen
Colorful cleaners: A pair of blue-streaked wrasses ( Labroides dimidiatus ) clean Achanthurus mata.

But in a study published this week, researchers found that third-party punishment directly benefits the punisher, at least when said punisher is a “cleaner” fish. Cleaner fish eat parasites housed on larger fish, called “clients.” The relationship is classic symbiosis: the cleaner gets food, while the client stays healthy.

In the blue-streaked wrasse Labroides dimidiatus under study, males and females clean in pairs. Occasionally, a female cleaner switches from eating parasites to the more delectable mucus, a sticky goo that protects the client from infection.

(We sure swear to skirt slimy, sophomoric silliness and subsequently stick to the science.)

Your cheatin’ heart

Behavioral ecologists call this “cheating” because it breaks the symbiosis and harms the client.

Redouan Bshary of the University of Neuchatel in Switzerland studies the wrasse in the Red Sea. He says a client typically swims into a “cleaning station” for about 20 seconds, where a male and female wrasse eat parasites from its exterior. When the female cheats, the client tends to get annoyed and swim to another cleaning station – unless the male wrasse darts at the female to keep her in line. That’s third-party punishment.

 Grey fish with bright yellow fins swimming with a brown background

Courtesy Richard Smith
A blue-streaked wrasse cleans a member of the genus Amblyglyphidodon

To test the situation in the lab, first author Nichola Raihani, a post-doctoral fellow at the London Zoological Society, smeared a Plexiglas plate with prawn meal or the less palatable fish flakes. When the females ate the prawn goop, the lab-keepers removed the plate and both fish confronted the sad sight of an empty menu.

When males responded aggressively to female cheating, the females were less likely to cheat again, reinforcing the notion that punishment would sustain the symbiosis and get him more food.

Is punishment beautiful?

Even though males were not directly harmed by the cheating, they directly benefited from the punishment, the authors wrote. “The establishment of self-serving third-party punishment in response to personal losses may be a key step toward third-party punishment without current involvement, as in humans.”

Scientists have observed punishment among other animals, says Katherine Cronin, a post-doctoral psychology research fellow who studies cooperation among monkeys at the University of Wisconsin-Madison. “Dominant rhesus monkeys might lash out at subordinates who didn’t properly alert them to food,” Cronin wrote us, “and female cowbirds (a species that lays eggs in other birds’ nests to be reared by hosts) may seek out and destroy the eggs of hosts who have previously destroyed cowbird eggs in a surprisingly mafia-like fashion.”

Nonetheless, Cronin says, “careful, experimental demonstration of punishment in animals has been rare and requires creative experimental designs like the one employed by Raihani and colleagues.” Cronin notes that cleaner fish are cooperative. “The strongest examples of punishment might not come from the most cognitively complex animals, but rather from the ones that rely most heavily on cooperation to survive.”

Three street signs posted on brick fence in residential area, lowest one reading good behaviour zone

The “good behavior” encouraged by this sign from the London (UK) police department may help the group and produce indirect benefits to the good-behaver. But in some cases, watching the behavior of others may also benefit the individual…

Sexual politics, fish-style

Exactly how does the male cleaner benefit from chasing misbehaving females? In most cases, we’d assume that keeping the food source (the client) around would constitute an evolutionary advantage because better-fed males can have more baby fishies, but we must remember that blue streaked wrasses are hermaphrodites. They begin reproducing as females, but females that grow large enough can turn into males.

Males can control this conversion, and avoid having another competitor for food, females and territory, by acting aggressively toward females, Bshary says. “If you remove the male, within two days, the female will show male behavior, and within a month, can release sperm that can fertilize eggs.”

And thus a male has an incentive to control the largest female in his harem, Bshary adds. “Typically the male tries to control her through aggression so she will not change sex. This is likely to be the main reason why the male responds aggressively to the female.”

What’s the human impact?

Whether the benefit is retaining food, a mate, or both, the study could shed light on puzzling human behaviors, says Raihani. “Until now, most studies on third party punishment have tended to assume it stems from a group-level benefit.”

A group-level evolutionary explanation for a crime-fighting good Samaritan would say that living in a crime-free society enables all people, including the Samaritan, to have more children. An individual-level explanation might suggest that the crime-fighting hero could gain social status, and therefore have a better choice of mates.

In the fish study, Raihani says, “We are trying to emphasize that you can get what looks like group-level behavior that evolves by individual selection.”

One final note, in case you thought the study is “just about fish.” The females are not the only fish who cheat, Raihani says. “Males cheat slightly more than females in this pair cleaning interaction, but females never punish males, because they are so much smaller.

So the males can have their cake and eat it too.”

Sound familiar?

David J. Tenenbaum

Bibliography

Punishers Benefit from Third-Party Punishment in Fish, Nichola J. Raihani, Alexandra S. Grutter and Redouan Bshary, Science, 8 Jan. 2010.

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Luminescent fungus

luminescent fungus

Luminescent fungus

A research trip to South America by a biology professor and colleagues from San Francisco State University has led to the discovery of seven new varieties of luminescent fungi. Four of the species are new to science, while the three others have never before been recorded with luminescent characteristics. Researchers hope that these discoveries will lead to a better understanding of the evolution of luminescence.

Taking inspiration from Mozart’s Requiem, Professor Dennis Desjardin named two of the new species Mycena luxaeterna (eternal light) and Mycena luxperpetua (perpetual light), referring also to their capacity for 24 hour luminescence.

The fungi are small with caps less than one centimeter across, and emit a bright, yellowish-green light.

Luminescent_fungus

Polyandry: Bees do it. What’s the big advantage?

A honeybee queen mates with 15 guys. This weakens family ties in the hive, possibly hampering the selfless behavior these bees need for survival. Does polyandry have hidden benefits for bees? (more…)